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Commits on Jun 2, 2021

• final push for revision

  wrshoemaker

  committed
  5d46ea7

Commits on Jan 26, 2021

• minor type

  wrshoemaker

  committed
  47ac8b1

Commits on Jan 17, 2021

• final cleanup before submission, README update

  wrshoemaker

  committed
  fbca25a

• add time to extinction to plots, merge taxa in survival plots

  wrshoemaker

  committed
  dafee99

Commits on Aug 21, 2020

• cleanup old mac

  wrshoemaker

  committed
  089120b

Commits on Apr 22, 2020

• maple convergence, convert main figs to matplotlib

  wrshoemaker

  committed
  f242bd9

Commits on Jan 10, 2020

• cleanup, megans metab data

  wrshoemaker

  committed
  e306f60

Commits on Dec 14, 2019

• big push, AFS, move figure code to python

  wrshoemaker

  committed
  d96ef1c

Commits on Dec 3, 2019

• individual taxa death curve figures

  wrshoemaker

  committed
  2a55bf0

Commits on Nov 26, 2019

• minor edits, fix phylo tip labels

  wrshoemaker

  committed
  c2dd514

Commits on Sep 30, 2019

• color coded taxa, shaope scale relationship

  wrshoemaker

  committed
  3b44954

Commits on Sep 19, 2019

• birth and death estimates

  wrshoemaker

  committed
  ff005d1

Commits on Aug 25, 2019

• re-do SNP calling unicycler

  wrshoemaker

  committed
  16846c6

Commits on Aug 7, 2019

• code to annotate significant genes

  wrshoemaker

  committed
  b4f05ba

• tables added, a lot of figure changes

  wrshoemaker

  committed
  5a50fed

Commits on Aug 1, 2019

• merge death curve example and llh

  wrshoemaker

  committed
  249dfcc

Commits on Jul 26, 2019

• pmc for all traits

  wrshoemaker

  committed
  1115e8e

Commits on Jul 25, 2019

• init table 2

  wrshoemaker

  committed
  f1e6ca2

Commits on Jul 24, 2019

• logpvalue figure, mutation threshold of 50

  wrshoemaker

  committed
  607e302

• survival multiplicity only for significant lines

  wrshoemaker

  committed
  a4858a4

• multiplicity analyses init

  wrshoemaker

  committed
  2b3c3f0

Commits on Jul 22, 2019

• genetic diversity estimates

  wrshoemaker

  committed
  a5bbc2b

Commits on Jul 20, 2019

• exp_vs_weib color p-value

  wrshoemaker

  committed
  33ac88a

Commits on Jul 19, 2019

• lag time vs shape fig

  wrshoemaker

  committed
  77c9106

• likelihood figure

  wrshoemaker

  committed
  eba2567

Commits on Jul 18, 2019

• fig. 1 update, 2nd draft

  wrshoemaker

  committed
  dc24499

Commits on Jul 9, 2019

• rm old breseq files, new breseq and irep data

  wrshoemaker

  committed
  43c002a

Commits on Jun 15, 2019

• pmc code and data update

  wrshoemaker

  committed
  ac39ef2

Commits on Jun 13, 2019

• pmc add summary file

  wrshoemaker

  committed
  4c7d740

Commits on Jun 12, 2019

• gomp analysis added

  wrshoemaker

  committed
  acb7b94

Commits on May 31, 2019

• minor plot formatting, SE of log of mttf instead of log of SE of mttf

  wrshoemaker

  committed
  efd26bd

Commits on May 30, 2019

• add first 8 days KBS0812

  wrshoemaker

  committed
  5ecd62d

• CIs to fig 1

  wrshoemaker

  committed
  575bcb9

Commits on May 29, 2019

• fixed date formatting errors in count data

  wrshoemaker

  committed
  49c7b6f

Commits on May 21, 2019

• illumina adapter and contam cleanup

  wrshoemaker

  committed
  4ddfbbd

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