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Stars

9 stars written in Python
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scikit-learn / scikit-learn

scikit-learn: machine learning in Python

Python 60,546 25,476 Updated Dec 24, 2024

scverse / scanpy

Single-cell analysis in Python. Scales to >1M cells.

Python 1,957 608 Updated Dec 23, 2024

dfm / emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

Python 1,480 432 Updated Dec 7, 2024

brianhie / scanorama

Panoramic stitching of single cell data

Python 269 49 Updated Apr 12, 2024

jacoblevine / PhenoGraph

Subpopulation detection in high-dimensional single-cell data

Python 134 70 Updated Oct 22, 2020

MSingerLab / COMETSC

COMET Single-Cell Marker Detection tool

Python 31 7 Updated Jun 21, 2022

tensionhead / pyBOAT

A Biological Oscillations Analysis Toolkit

Python 18 12 Updated Dec 5, 2024

LiBuchauer / cellanneal

User-friendly bulk RNAseq deconvolution using simulated annealing

Python 17 3 Updated Feb 8, 2024

anna-alemany / scScarTrace

Python 5 3 Updated Feb 21, 2018