User-friendly bulk RNAseq deconvolution using simulated annealing

Phylogenetic inference from whole genome sequencing data and modeling of clonal dynamics

Code for normalizing, filtering, parsing and analyzing spatial transcriptomics and spatial proteomics of the murine small intestinal epithelium

A Biological Oscillations Analysis Toolkit

COMET Single-Cell Marker Detection tool

Panoramic stitching of single cell data

scikit-learn: machine learning in Python

An optimized graphs package for the Julia programming language

Single-cell analysis in Python. Scales to >1M cells.

Subpopulation detection in high-dimensional single-cell data

Seeing Theory is a project designed and created by Daniel Kunin with support from Brown University's Royce Fellowship Program and National Science Foundation group STATS4STEM. The goal of the proje…

Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equat…

The Python ensemble sampling toolkit for affine-invariant MCMC