resources for learning bioinformatics

Genomic coordinates of problematic genomic regions as GRanges

✂️ Deep learning-based splice site predictor that improves spliced alignments

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

Analysis pipeline for ATAC-seq data

Intro to ChIPseq using HPC

HMMRATAC peak caller for ATAC-seq data

Papers with code for single cell related papers

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Tutorial for scRNA-seq data analysis beginners using R

HemTools: a collection of NGS pipelines and bioinformatic analyses

Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

RNA-seq workflow: exploratory analysis and differential expression

An R notebook for RNaseq differential expression and functional enrichment analysis.

Skin changer for League of Legends (LOL)

Supplementary files for my book, "Bioinformatics Data Skills"

生物信息学技能提升，专注于工具使用与编程

500 line or less 中文翻译计划。

Analysis of Mars LMD GCM simulations

planetary constants and useful computations

a cool python-based tool to plot stuff and explore data

A minimal CGI-based HTML page using Python

We present the NASA Ames Legacy Mars Global Climate Model for public release. This model uses a modified version of the ARIES/GEOS dynamical core coupled with a set of Mars physics packages to simu…