Change regex to handle new name format for GRCh38.p2

MZ-CY-Han1998 · Apr 3, 2015 · feb4397 · feb4397
1 parent 11a205f
commit feb4397
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diff --git a/CHANGELOG b/CHANGELOG
@@ -1,3 +1,7 @@
+v0.10.6-beta:
+* fixed overflow bug in command line parsing
+* fixed GRCh38.p2 bug in human genome downloads
+
 v0.10.5-beta:
 * fix bug in GRCh38 download to handle multi-fasta files
 * add --header-line and --intermediate-ranks options to kraken-mpa-report

diff --git a/scripts/download_genomic_library.sh b/scripts/download_genomic_library.sh
@@ -100,7 +100,7 @@ case "$1" in
       for directory in $directories
       do
         wget --spider --no-remove-listing $FTP_SERVER/genomes/H_sapiens/$directory/
-        file=$(perl -nle '/^-/ and /\b(hs_ref_GRCh\w+\.fa\.gz)\s*$/ and print $1' .listing)
+        file=$(perl -nle '/^-/ and /\b(hs_ref_GRCh\S+\.fa\.gz)\s*$/ and print $1' .listing)
         [ -z "$file" ] && exit 1
         rm .listing
         wget $FTP_SERVER/genomes/H_sapiens/$directory/$file