Skip to content

Issues: MachineLearningLifeScience/poli

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
48 Open 77 Closed
48 Open 77 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add a description of the files being downloaded from the internet, and a progress bar (à la transformers) enhancement New feature or request
#144 opened Jan 21, 2024 by miguelgondu
foldx objectives: automatically recognize binaries with date extension in home dir enhancement New feature or request
#48 opened Sep 18, 2023 by miguelgondu 1.0.0 - New observer interface, several black boxes for proteins, and simpler isolation mechanisms
@miguelgondu
Add diffdock as an objective function
#49 opened Sep 18, 2023 by miguelgondu
@HirahTang
Test the chemistry and protein utilities. enhancement New feature or request
#56 opened Sep 19, 2023 by miguelgondu
1
parallelized black_box call in foldx_rfp_lambo raises _pickle.PicklingError bug Something isn't working
#59 opened Sep 20, 2023 by RMichae1
2
size of starting dataset as part of problem info and factory create
#70 opened Oct 3, 2023 by RMichae1
1
Unify pdb file fixing enhancement New feature or request
#86 opened Nov 6, 2023 by miguelgondu
Improve testing speed by mocking enhancement New feature or request
#88 opened Nov 7, 2023 by miguelgondu
Make tests more efficient enhancement New feature or request
#93 opened Nov 27, 2023 by miguelgondu
Move the temporary file management to tempfile enhancement New feature or request
#101 opened Dec 11, 2023 by miguelgondu
Set-up CI building of wheels enhancement New feature or request
#119 opened Jan 5, 2024 by miguelgondu
Verify sequence lengths using a tokenizer, and not by character lengths
#126 opened Jan 8, 2024 by miguelgondu
foldx objective functions could be under a common interface enhancement New feature or request
#17 opened Aug 31, 2023 by miguelgondu
1
Add a cache to FoldxInterface enhancement New feature or request
#131 opened Jan 12, 2024 by miguelgondu
Add default alphabets for SMILES and SELFIES enhancement New feature or request
#148 opened Jan 24, 2024 by miguelgondu 1.0.0 - New observer interface, several black boxes for proteins, and simpler isolation mechanisms
1
Bug in creation of the gfp objectives bug Something isn't working
#150 opened Jan 29, 2024 by miguelgondu
2
Black boxes should keep track of seeds enhancement New feature or request
#167 opened Mar 12, 2024 by miguelgondu
In isolation, the user should be encouraged to create instances of objects
#170 opened Mar 14, 2024 by miguelgondu
Should we send the observer an x0 and y0? enhancement New feature or request
#171 opened Mar 14, 2024 by miguelgondu
@SimonBartels
2
Test foldx by mocking the binary/black box call
#186 opened May 15, 2024 by miguelgondu
Isolated functions are not terminating gracefully
#195 opened May 24, 2024 by miguelgondu
Revisiting multiobserver w. the new interface
#197 opened May 27, 2024 by miguelgondu
Update black boxes to numpy==2.0
#201 opened Jun 17, 2024 by miguelgondu
1
Clone shallow repos
#209 opened Jul 8, 2024 by miguelgondu
FoldX v4 discontinued, update tests and coverage bug Something isn't working
#296 opened Jan 2, 2025 by RMichae1
1
ProTip! Type g i on any issue or pull request to go back to the issue listing page.