Skip to content

Issues: MachineLearningLifeScience/poli

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
48 Open 77 Closed
48 Open 77 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

The pain-points of isolation and how to fix them
#261 opened Sep 26, 2024 by miguelgondu
@miguelgondu @SimonBartels
5
Implement set of DMS experiment results as static optimization problems
#255 opened Sep 12, 2024 by RMichae1
@RMichae1
4
Add additional information (e.g. data packages or surrogates) to problems
#240 opened Aug 8, 2024 by miguelgondu
2
Should we send the observer an x0 and y0? enhancement New feature or request
#171 opened Mar 14, 2024 by miguelgondu
@SimonBartels
2
Bug in creation of the gfp objectives bug Something isn't working
#150 opened Jan 29, 2024 by miguelgondu
2
parallelized black_box call in foldx_rfp_lambo raises _pickle.PicklingError bug Something isn't working
#59 opened Sep 20, 2023 by RMichae1
2
FoldX v4 discontinued, update tests and coverage bug Something isn't working
#296 opened Jan 2, 2025 by RMichae1
1
Design constraints into the black boxes
#251 opened Aug 29, 2024 by miguelgondu
4 tasks
1
Keep poli versions updated for the user (?)
#219 opened Jul 18, 2024 by miguelgondu
1
size of starting dataset as part of problem info and factory create
#70 opened Oct 3, 2023 by RMichae1
1
Test the chemistry and protein utilities. enhancement New feature or request
#56 opened Sep 19, 2023 by miguelgondu
1
foldx objective functions could be under a common interface enhancement New feature or request
#17 opened Aug 31, 2023 by miguelgondu
1
Feature request HADDOCK enhancement New feature or request
#295 opened Dec 17, 2024 by RMichae1
Float inputs [b,] fail in the is_aligned check
#292 opened Nov 22, 2024 by miguelgondu
Stability predictor sign conformity
#291 opened Nov 22, 2024 by RMichae1
@RMichae1
Remove biopython dependency in pyrosetta
#287 opened Nov 7, 2024 by miguelgondu
Simplify conda environments and test them
#271 opened Oct 2, 2024 by miguelgondu
Replace conda for mamba if the user has it installed
#264 opened Oct 1, 2024 by miguelgondu
The great documentation clean-up
#257 opened Sep 17, 2024 by miguelgondu
2 tasks
1.0.0 - New observer interface, several black boxes for proteins, and simpler isolation mechanisms
Implement ways of combining black boxes: __mult__ and __add__ and so on.
#256 opened Sep 12, 2024 by miguelgondu
Implement data packages for Ehrlich
#254 opened Sep 3, 2024 by miguelgondu
If running in a cluster, some conda commands might not be available
#252 opened Aug 29, 2024 by miguelgondu
module_to_import can be wrong, but get_inner_function will still work because of the try-except
#250 opened Aug 29, 2024 by miguelgondu
Add Absolut! as a black box (following AntBO)
#244 opened Aug 15, 2024 by miguelgondu
4 tasks
Env creation doesn't work if the config file is not fresh
#241 opened Aug 9, 2024 by miguelgondu
ProTip! Adding no:label will show everything without a label.