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Commits on Apr 29, 2022

• Attempt fix missing mamba

  RenzoTale88

  authored
  312fb56

• Attempt local instead of global mamba install

  RenzoTale88

  authored
  08cdea9

• Attempt manual installation of mamba

  RenzoTale88

  authored
  ebbe959

• Fix typo in workflow for anaconda

  RenzoTale88

  authored
  334134b

• Update python in testing and reinstate mamba

  RenzoTale88

  authored
  2c45ebf

• Use local dependencies instead of anaconda in CI

  RenzoTale88

  authored
  fa692e5

Commits on Apr 28, 2022

• Replace mamba with conda in actions

  RenzoTale88

  authored
  fba9a69

• Increase timeout for anaconda env create

  RenzoTale88

  committed
  6edf82a

Commits on Mar 31, 2022

• Improve documentation for chaining stage

  RenzoTale88

  committed
  b67bbbe

• Merge branch 'main' of https://github.com/evotools/nf-LO into main

  RenzoTale88

  committed
  b6b9f9e

• NCBI dataset now downloads only genomic DNA

  RenzoTale88

  committed
  9995f4b

Commits on Mar 26, 2022

• Revert mistake change to README.md

  RenzoTale88

  authored
  c6a039e

• Final README.md update

  RenzoTale88

  authored
  4f7d252

Commits on Oct 14, 2021

• Improveme logo

  RenzoTale88

  committed
  deee61a

• Slightly reduce memory requirements for blat

  RenzoTale88

  committed
  067886f

• Increase memory requirements for blat

  RenzoTale88

  committed
  8c1166f

• Fix scratch option for eddie custom configuration

  RenzoTale88

  committed
  9f68138

• Add scratch option for eddie custom configuration

  RenzoTale88

  committed
  182d714

• Add logging when requesting an inexisting preset for the analyses.

  RenzoTale88

  committed
  4d918c0

Commits on Aug 13, 2021

• Update references and citations

  RenzoTale88

  committed
  6e65a3f

Commits on Aug 12, 2021

• Change mode using VScode

  

  renzo_tale

  committed
  ec788f0

• Better resource management for lastz

  RenzoTale88

  committed
  3af766b

• Add more details on the output files detailed in the documentation

  RenzoTale88

  committed
  8f5e96b

Commits on Aug 11, 2021

• Fix submission rate definition for local tasks

  RenzoTale88

  committed
  4666ada

Commits on Jul 28, 2021

• Fix bug when importing a customized profile

  RenzoTale88

  committed
  0d144f8

• Add back custom parameters for eddie in the configuration files

  RenzoTale88

  committed
  508fcce

• Give option to specify local custom configuration with --my_config and -profile custom_profile

  RenzoTale88

  committed
  fae3f95

• Automatic fetch of version from manifest when logging

  RenzoTale88

  committed
  9846eff

• Limit core number to 1 for all single core jobs avan when retrying

  RenzoTale88

  committed
  689fa8a

• Better queue management for local runs

  Show description for 9b2f0cf
  RenzoTale88

  committed
  9b2f0cf

Commits on Jul 26, 2021

• Fix anaconda running out of time when creating the environment

  RenzoTale88

  committed
  6910205

Commits on Jul 20, 2021

• Fix links to GSalign and minimap2 websites

  RenzoTale88

  committed
  aa4d4eb

Commits on Jul 6, 2021

• Minor edit to resource web page

  RenzoTale88

  committed
  ecfd187

• Edit resources readthedocs file

  RenzoTale88

  committed
  f6d87d9

• Update documentation with resource section

  RenzoTale88

  committed
  a665662

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