Human Metabolic Network Contains genome-scale metabolic networks and analysis done on the human metabolic network.
RetroBioMet: folder contains retrobiosynthesis based analysis of human metabolic network
- Mass differences based on reaction rules
- Predicted metabolites based on reaction rules and metabolites present in the HumanNet
Human1 Genome-scale metabolic network for Human
Reference
Robinson JL, Kocabaş P, Wang H, Cholley PE, Cook D, Nilsson A, Anton M, Ferreira R, Domenzain I, Billa V, Limeta A. An atlas of human metabolism. Science Signaling. 2020 Mar 24;13(624). https://stke.sciencemag.org/content/13/624/eaaz1482?rss=1
Download Source
- Direct Github SBML: https://github.com/SysBioChalmers/Human-GEM/tree/master/modelFiles/xml
- Github: https://github.com/SysBioChalmers/Human-GEM
- Available with API here: https://metabolicatlas.org/
- Repository link: https://metabolicatlas.org/gems/repository
- User Guide: https://sysbiochalmers.github.io/Human-GEM-guide/
RECON3D Genome-scale metabolic network for Human
Reference
Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Gonzalez GA, Aurich MK, Prlić A. Recon3D enables a three-dimensional view of gene variation in human metabolism. Nature biotechnology. 2018 Mar;36(3):272. https://www.nature.com/articles/nbt.4072#Sec25
Download source
- Available here: http://bigg.ucsd.edu/models/Recon3D
- Also available with API here: https://www.vmh.life/
- Direct link: https://www.vmh.life/#human/all