Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Curation of reversibility in database #57

Open
samseaver opened this issue Jul 21, 2017 · 0 comments
Open

Curation of reversibility in database #57

samseaver opened this issue Jul 21, 2017 · 0 comments

Comments

@samseaver
Copy link
Contributor

This is a placeholder to remind us to discuss how we'd want to update and curate any reaction direction and thermodynamic reversibility in the biochemistry and in the templates. We came across a good example:

rxn00929 (1) NAD[0] + (1) L-Proline[0] > (1) NADH[0] + (2) H+[0] + (1) 1-Pyrroline-5-carboxylate[0]

In all the pathways I've observed, the reaction is the last step in proline biosynthesis, but the deltaG and thermodynamic heuristics list it as irreversible going from left to right. It needs to be at least reversible for proline biosynthesis to occur, at least in eukaryotes.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant