Bayesian MCMC matrix factorization algorithm

Methods for detecting doublets in single-cell sequencing data

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

Code used to process the data of the HBCA project

Spatial Single Cell Analysis in Python

Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around

Every front-end GUI client for ChatGPT, Claude, and other LLMs

Biology-centered data-driven quality control for scRNA-seq

Conversion between scRNA-seq objects

CRAN Task View: Anomaly Detection with R 🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛍️🛒🛒

Anomaly detection related books, papers, videos, and toolboxes

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Tutorials for DataCamp (www.datacamp.com)

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data

Community-provided extensions to Seurat

R toolkit for single cell genomics

R package for detecting doublets in single-cell RNA sequencing data

Data processing and analysis scripts for our spatial profiling of embryos using seqFISH