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Commits on Jan 17, 2024

• Created using Colaboratory

  O-mics

  committed
  d9353a5

Commits on Nov 21, 2023

• correct enhancer config to match article

  r-trimbour

  committed
  8e20f4d

Commits on Nov 2, 2023

• fix order in yaml dump

  r-trimbour

  committed
  fd838ea

• corrected directed/weighted order

  r-trimbour

  committed
  e18d530

Commits on Oct 30, 2023

• update binding config to use TF-TF and target gene config to NOT go back to TF from peaks

  r-trimbour

  committed
  ffa7b72

• update binding config to use TF-TF and target gene config to NOT go back to TF from peaks

  r-trimbour

  committed
  6d00ab9

Commits on Oct 18, 2023

• change from peak to atac_multiplex name..

  r-trimbour

  committed
  30f12fd

• error typo peak_multiplex var name

  r-trimbour

  committed
  12ca21e

• Merge branch 'main' of github.com:cantinilab/HuMMuS

  r-trimbour

  committed
  34d627d

• error correction in handling of nondefault layer names

  r-trimbour

  committed
  648cf65

Commits on Oct 14, 2023

• update variable name in format_multiplex_names

  r-trimbour

  authored
  1e53bcb

Commits on Oct 13, 2023

• correct tfs subobject in tf2motifs databases creation

  r-trimbour

  committed
  8008e2f

Commits on Oct 2, 2023

• correct tf_null wrapper df initialisation

  r-trimbour

  committed
  12caf4b

• update default value for tf_network and check if null

  r-trimbour

  committed
  bcf9617

• corrected null network computation if omnipath fails

  r-trimbour

  committed
  e599c23

• type in tf_null_network

  r-trimbour

  committed
  4fbf81a

• remove all tf_network function

  r-trimbour

  committed
  b7299fe

• Wrapping of TF layer methods externally

  r-trimbour

  committed
  4edd961

Commits on Sep 4, 2023

• back to old vignette

  r-trimbour

  committed
  5870933

• simplified vignette version

  r-trimbour

  committed
  49f40ff

• typo

  r-trimbour

  committed
  389f472

• update doc

  r-trimbour

  committed
  fef46a6

• new poetry build

  r-trimbour

  committed
  46e4c71

• correct bipartite_type to handle tuples

  r-trimbour

  committed
  3e200b1

• ignore Examples since vignettes exist

  r-trimbour

  committed
  4f31767

Commits on Sep 3, 2023

• just new version name from direction in max _lambda

  r-trimbour

  committed
  e7e38e3

• add direction in max_lambda definition

  r-trimbour

  committed
  ae4f636

• correct add_network to work on mutlilayer objects also

  r-trimbour

  committed
  48b0339

• added function for config creation from R directly

  r-trimbour

  committed
  fe4068f

Commits on Jul 10, 2023

• updated eta, lambda setup in config by now series and dataframes, though still possible as initial input (np.ndarray s)

  r-trimbour

  committed
  5c92c29

• import submodules directly

  r-trimbour

  committed
  8884e9d

• correct motifs_dbs class (tf slot)

  r-trimbour

  committed
  543bcc2

• correct tfs saving in motifs_db object from get_tf2motifs

  r-trimbour

  committed
  a93c494

• correct JASPAR db name for mouse

  r-trimbour

  committed
  8880652

Commits on Jul 4, 2023

• update version hummuspy number

  r-trimbour

  committed
  c1b8e15

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