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UMLS readme update
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Timur committed Oct 1, 2019
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17 changes: 8 additions & 9 deletions UMLS/readme.md
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Expand Up @@ -6,15 +6,14 @@ Prerequisites:

1. Run create_source_tables.sql
2. Download umls-YYYYAB-full.zip (for example umls-2016AB-full.zip) from http://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html
3. Unpack
MRCONSO.RRF.*
MRHIER.RRF.*
MRMAP.RRF.*
MRSMAP.RRF.*
MRSAT.RRF.*
MRREL.RRF.*
3. Get full files
MRCONSO.RRF
MRHIER.RRF
MRMAP.RRF
MRSMAP.RRF
MRSAT.RRF
MRREL.RRF

then run in console:
gunzip *.gz && cat MRCONSO.RRF.* > MRCONSO.RRF && cat MRHIER.RRF.* > MRHIER.RRF && cat MRSAT.RRF.* > MRSAT.RRF && cat MRREL.RRF.* > MRREL.RRF && rm MRCONSO.RRF.* MRHIER.RRF.* MRSAT.RRF.* MRREL.RRF.*
using MetamorphoSys https://www.nlm.nih.gov/research/umls/implementation_resources/community/mmsys/BatchMetaMorphoSys.html

4. Run in devv5 (with fresh vocabulary date): SELECT sources.load_input_tables('UMLS',TO_DATE('20180507','YYYYMMDD'),'2018AA');

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