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Commits on Mar 20, 2024

• r1206: enabled RMQ for lr:hqae

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  lh3

  committed
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Commits on Mar 11, 2024

• r1190: output unadjusted dp_max to ms:i

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  lh3

  committed
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Commits on Mar 10, 2024

• r1183: added lr:hq; fixed transition

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  lh3

  committed
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Commits on Jun 4, 2023

• Illumina Complete Long Read presets (lh3#1069)

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  koadman

  authored
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Commits on Apr 8, 2023

• r1164: changed the syntax of -J

  lh3

  committed
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Commits on Oct 6, 2022

• miniprot-like splice model

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  lh3

  committed
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Commits on Aug 7, 2021

• r1094: for --split-prefix update max_dp at the end

  lh3

  committed
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Commits on Jul 19, 2021

• dev-r1080: fixed negative dp_max

  lh3

  committed
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• dev-r1079: per-read error rate

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  lh3

  committed
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Commits on Jul 18, 2021

• dev-r1078: decoupling ranking penalty

  lh3

  committed
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Commits on Jul 17, 2021

• dev-r1076: log gap penalty

  lh3

  committed
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Commits on Jul 16, 2021

• fixed potential integer overflows

  lh3

  committed
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• Merge branch 'master' into utec

  lh3

  committed
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Commits on Jul 2, 2021

• Use #defines for CIGAR operators in C code

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  jmarshall

  authored and

  lh3

  committed
  260a68d

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• Use the full MIDNSHP=X string whenever printing CIGAR strings

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  jmarshall

  authored and

  lh3

  committed
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Commits on May 24, 2021

• r1048: rescue long gaps

  lh3

  committed
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Commits on Apr 8, 2021

• r1012: fixed an off-by-one bug; resolves lh3#489

  lh3

  committed
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Commits on Jun 12, 2020

• Initialize r->p if ez->zdropped

  

  armintoepfer

  authored and

  lh3

  committed
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Commits on Apr 21, 2020

• r985: optionally report cs/cg on the query strand

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  lh3

  committed
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Commits on Jan 21, 2020

• r973: fixed compiling errors caused

  lh3

  committed
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• support ALT mapping

  lh3

  committed
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Commits on May 1, 2019

• r935: fixed a cigar like 5I6D7I; resolved lh3#392

  lh3

  committed
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Commits on Apr 28, 2019

• implemented in exts; testing is the next

  lh3

  committed
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Commits on Jan 10, 2019

• r904: fixed a corner-case segfault. Resolves lh3#307.

  lh3

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Commits on Nov 18, 2018

• r888: fixed incorrect CIGAR when --eqx in use

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  lh3

  committed
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Commits on Nov 6, 2018

• r881: a recent change reduces sr accuracy

  lh3

  committed
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Commits on Nov 5, 2018

• r876: skip DP if taking too much RAM (lh3#259)

  lh3

  committed
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Commits on Oct 23, 2018

• r858: fixed a bug; resolves lh3#254

  lh3

  committed
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Commits on Oct 16, 2018

• r852: a minor when large --end-bonus is in use

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  lh3

  committed
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Commits on Aug 5, 2018

• r822: added option --no-end-flt

  lh3

  committed
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Commits on Jul 15, 2018

• working with toy examples

  lh3

  committed
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• apparently mm_append_cigar() wastes some memory

  lh3

  committed
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Commits on Jun 20, 2018

• r794: fixed a bug in seed filtering

  lh3

  committed
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Commits on Jun 19, 2018

• r792: fixed -Wextra warnings and resolved lh3#184

  lh3

  committed
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• Fix CIGAR reallocation with --eqx

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  Aaron Wenger

  authored and

  lh3

  committed
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