Merge branch 'dev' into pat732

Patrick7321 · Oct 31, 2019 · c31eb28 · c31eb28
2 parents 408e428 + 344b5ff
commit c31eb28
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Showing 386 changed files with 21 additions and 6 deletions.
diff --git a/Server/templates/index.html b/Server/templates/index.html
@@ -24,7 +24,7 @@
 <html>
     <head>
         <meta charset='utf-8'>
-        <title>Mosaic</title>
+        <title>MBv2</title>
         <link rel='stylesheet' type='text/css' href='/resources/css/index.css'>
         <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css' integrity='sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm' crossorigin='anonymous'>
     </head>
@@ -33,7 +33,7 @@
             <img src='/resources/imgs/spinner.gif' alt='spinner' class='spinner'/>
         </div>
         <div class='container'>
-            <h1>M.O.S.A.I.C</h1>
+            <h1>MBv2</h1>
             <div id='alert-container'></div>
             <div class='row'>
                 <div class='col-6 text-center'>

diff --git a/Server/templates/stitched_single.html b/Server/templates/stitched_single.html
@@ -20,11 +20,11 @@
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 SOFTWARE. -->
 
-<!DOCTYPE html> 
+<!DOCTYPE html>
 <html>
     <head>
         <meta charset='utf-8'>
-        <title>Mosaic</title>
+        <title>MBv2</title>
         <link rel='stylesheet' type='text/css' href='/resources/css/stitched.css'>
         <link rel="stylesheet" type="text/css" href="/resources/css/imageviewer.css"/>
         <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css' integrity='sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm' crossorigin='anonymous'>
@@ -34,7 +34,7 @@
             <img src='/resources/imgs/spinner.gif' alt='spinner' class='spinner'/>
         </div>
         <div class='container'>
-            <h1>M.O.S.A.I.C</h1>
+            <h1>MBv2</h1>
             <h3>{{statusString}}</h3>
             <div class='row mb-3'>
                 <div class='col-12 text-center'>

diff --git a/lib/counting.py b/lib/counting.py
@@ -175,7 +175,9 @@ def getCrushedBeads(self, image):
         gray = cv2.cvtColor(color, cv2.COLOR_BGR2GRAY)
         blur = cv2.GaussianBlur(gray, (31, 31), 0)
         thresh = cv2.threshold(blur, 225, 255, cv2.THRESH_BINARY_INV)[1]
-        imgOutput, contours, hierarchy = cv2.findContours(thresh, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
+        kernel = np.ones((5,5),np.uint8)
+        erosion = cv2.erode(thresh,kernel,iterations = 1)
+        imgOutput, contours, hierarchy = cv2.findContours(erosion, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
         cl = colorLabeler.ColorLabeler()
 
         for c in contours:

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diff --git a/...ces/Beads_I/20180910_ARD_FITC-ReactiveBlue/20180910_ARD_FITC-ReactiveBlue_9.jpg b/...ces/Beads_I/20180910_ARD_FITC-ReactiveBlue/20180910_ARD_FITC-ReactiveBlue_9.jpg
diff --git a/test/resources/Beads_I/20180910_ARD_ReactiveBlue_1st-trial/.picasa.ini b/test/resources/Beads_I/20180910_ARD_ReactiveBlue_1st-trial/.picasa.ini
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diff --git a/test/resources/Beads_I/20180910_ARD_ReactiveBlue_1st-trial/.picasaoriginals/.picasa.ini b/test/resources/Beads_I/20180910_ARD_ReactiveBlue_1st-trial/.picasaoriginals/.picasa.ini
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