knnsmootheR

This is the R implementation of the k-nearest neighbors smoothing algorithm (Wagner et al., 2017) for UMI-filtered single- cell RNA-Seq data.

Installation

Install the package knnsmoother by using devtools is highly suggested. Run the following commands in a R console to install the package.

install.packages("devtools")
devtools::install_github('yanailab/knn-smoothing', subdir = 'knnsmoother')

Name	Name	Last commit message	Last commit date
Latest commit Puriney 🐶 import from yanailab knn-smoothing Jan 9, 2018 0408052 · Jan 9, 2018 History 1 Commit
R	R	🐶 import from yanailab knn-smoothing	Jan 9, 2018
man	man	🐶 import from yanailab knn-smoothing	Jan 9, 2018
src	src	🐶 import from yanailab knn-smoothing	Jan 9, 2018
tests	tests	🐶 import from yanailab knn-smoothing	Jan 9, 2018
vignettes	vignettes	🐶 import from yanailab knn-smoothing	Jan 9, 2018
.gitignore	.gitignore	🐶 import from yanailab knn-smoothing	Jan 9, 2018
DESCRIPTION	DESCRIPTION	🐶 import from yanailab knn-smoothing	Jan 9, 2018
NAMESPACE	NAMESPACE	🐶 import from yanailab knn-smoothing	Jan 9, 2018
README.md	README.md	🐶 import from yanailab knn-smoothing	Jan 9, 2018