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tiagochst committed Feb 26, 2017
1 parent f7096e6 commit 88548fc
Showing 1 changed file with 12 additions and 5 deletions.
17 changes: 12 additions & 5 deletions vignettes/query.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -79,19 +79,26 @@ with the following arguments:
* **platform** Experimental data platform (HumanMethylation450, AgilentG4502A_07 etc). Used only for legacy repository
* **file.type** A string to filter files, based on its names. Used only for legacy repository

## project options
The options for the field `project` are below:
```{r, eval = TRUE, echo = FALSE}
knitr::kable(TCGAbiolinks:::getGDCprojects(), digits = 2,
caption = "List of projects",row.names = FALSE)
datatable(TCGAbiolinks:::getGDCprojects(),
filter = 'top',
options = list(scrollX = TRUE, keys = TRUE, pageLength = 10),
rownames = FALSE,
caption = "List of projects")
```

## sample.type options
The options for the field `sample.type` are below:
```{r, eval = TRUE, echo = FALSE}
knitr::kable(TCGAbiolinks:::getBarcodeDefinition(), digits = 2,
caption = "List sample types",row.names = FALSE,)
datatable(TCGAbiolinks:::getBarcodeDefinition(),
filter = 'top',
options = list(scrollX = TRUE, keys = TRUE, pageLength = 10),
rownames = FALSE,
caption = "List sample types")
```


The other fields (data.category, data.type, workflow.type, platform, file.type) can be found below.
Please, not that these tables are still incomplete.

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