An async utility for creating metabolite tables from KEGG database.
To perform pathway enrichment analysis one of the inputs required is a table of metabolites per pathway. KEGG[1-3] is a great database for this purpose. KEGGpull streamlines this process by using async requests and formats the results and finally exports as a tab separated file.
[1]Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000). doi <https://doi.org/10.1093/nar/28.1.27> [2]Kanehisa, M; Toward understanding the origin and evolution of cellular organisms. Protein Sci. 28, 1947-1951 (2019). doi <https://doi.org/10.1002/pro.3715> [3]Kanehisa, M., Furumichi, M., Sato, Y., Kawashima, M. and Ishiguro-Watanabe, M.; KEGG for taxonomy-based analysis of pathways and genomes. Nucleic Acids Res. 51, D587-D592 (2023). doi <https://doi.org/10.1093/nar/gkac963>
This project has been set up using PyScaffold 4.3.1. For details and usage information on PyScaffold see https://pyscaffold.org/.
If you use this tool please cite this repo.