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Commits on Feb 9, 2025

• Uniformised Versions, added new config for fix ressources, fixed eggnog, split N50 and comebin for better conda install, Translated comments in code

  

  RVanDamme

  committed
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Commits on Sep 2, 2024

• Update chopper container

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  RVanDamme

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  16c19d2

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Commits on Jun 3, 2024

• Muffin_v2 (#45)

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  Avanbelle

  authored
  e03ddea

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Commits on Feb 16, 2022

• fixing #26

  replikation

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  7e68326

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• fix #29 added runreports

  replikation

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Commits on Oct 30, 2020

• Update local.config

  RVanDamme

  authored
  9d85eee

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• Update local.config

  RVanDamme

  authored
  67f85a6

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• Create cloud.config

  RVanDamme

  authored
  9be86f8

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• Update container.config

  RVanDamme

  authored
  77287be

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• Update conda.config

  RVanDamme

  authored
  90125be

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Commits on Oct 29, 2020

• Fix concoct for all system

  RVanDamme

  authored
  f19bb19

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Commits on Oct 28, 2020

• update checkm version

  RVanDamme

  authored
  a5a7f6d

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• update checkm

  RVanDamme

  authored
  d33690e

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Commits on Aug 11, 2020

• update docker version of metawrap

  RVanDamme

  committed
  85fc2da

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Commits on Aug 10, 2020

• update metawrap to 1.3 in conda

  RVanDamme

  committed
  1bf54ae

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• update to flye 2.8; sourmash genome size not required anymore

  RVanDamme

  committed
  17e93aa

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• update to flye 2.8; sourmash genome size not required anymore

  RVanDamme

  committed
  45c6b32

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Commits on Jul 22, 2020

• fix checkm setup of DB and updated concoct/samtools version in conda

  RVanDamme

  committed
  1b31ee9

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Commits on Jul 17, 2020

• update the parameter; reset metawrap env for conda; and update setup conda version of software

  RVanDamme

  committed
  06bd81d

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Commits on Jul 16, 2020

• update README.md

  RVanDamme

  committed
  b1a8c01

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Commits on Jul 14, 2020

• fix metawrap and checkm to more available ram

  RVanDamme

  committed
  b601f83

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Commits on Jul 6, 2020

• updated the container for pilon and bwa

  RVanDamme

  committed
  9857f9e

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• fixed ram variable for pilon

  RVanDamme

  committed
  1d5889f

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Commits on Jul 2, 2020

• update racon version and minimap_polish to paf to fix it in docker; update medaka to fix the -m model (older version had different grammar)

  RVanDamme

  committed
  8af11b8

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Commits on Jun 29, 2020

• extended the custom gcloud parameter as the previous method was not working properly (all were preemptible false instead of only the selected)

  RVanDamme

  committed
  31436ce

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Commits on Jun 24, 2020

• added custom parameter for process with gcloud; fixed flye to work with v2.7; fixed bash mem var to work in container and conda; fixed command issue with var !{

  RVanDamme

  committed
  e93ceb0

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Commits on Jun 23, 2020

• fix bootDiskSize for gcloud to allow the use of bigger docker (e.g. Trinity); Fix the ram nomenclature in config container; fix cpu/RAM ratio for spades

  RVanDamme

  committed
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Commits on Jun 22, 2020

• correct to minimal ram amount for checkm; and clean the gcloud profile

  RVanDamme

  committed
  94c0d4f

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Commits on Jun 18, 2020

• updated minimap language; added retry to metawrap; started cleaning the code; optimised the config selection

  RVanDamme

  committed
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