Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
ConsensusMaker.py		ConsensusMaker.py
CountMuts.py		CountMuts.py
DCS_family_size_plotter.py		DCS_family_size_plotter.py
DuplexMaker.py		DuplexMaker.py
LICENSE		LICENSE
README.md		README.md
UnifiedConsensusMaker.py		UnifiedConsensusMaker.py
bamDCS		bamDCS
bamRdf		bamRdf
bwa		bwa
lfmd.sh		lfmd.sh
lfmd2.sh		lfmd2.sh
mut-position.py		mut-position.py
mut-summary.pl		mut-summary.pl
muts_by_read_position.py		muts_by_read_position.py
rev.sh		rev.sh
revision.sh		revision.sh
samtools		samtools
tag_to_header.py		tag_to_header.py
ts.sh		ts.sh

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LFMD

Low Frequency Mutation Detector

wget https://github.com/RainyEricYe/LFMD.git

Rui Ye et al. LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags. https://www.biorxiv.org/content/10.1101/617381v9

vi lfmd2.sh && ajust parameters and file paths
sh lfmd2.sh in.fq1 in.fq2 outprefix