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Achievement: Pull SharkAchievement: YOLO

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  • trackcluster Public

    An analysis pipeline for Nanopore direct-RNA sequencing

    bioinformatics rna-seq nanopore longread
    Python 12 3 Updated Nov 26, 2024

  • hammer9 Public

    Forked from lrslab/Hammerhead

    This project is designed to find the potential modification sites.

    Python Updated Jan 19, 2024

  • z Public

    Forked from rupa/z

    z - jump around

    Shell Do What The F*ck You Want To Public License Updated Sep 28, 2023

  • primerdiffer Public

    Design specific primers genome-widely.

    Python 8 GNU General Public License v2.0 Updated Aug 27, 2023

  • primervcf Public

    primderdiffer submodule: primervcf

    Python 6 GNU General Public License v2.0 Updated May 24, 2023

  • pyssw Public

    pyssw: python wrapper for Smith-Waterman Python Module

    C Updated Feb 17, 2023

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Jan 23, 2023

  • bioinformatics_scripts Public

    bioinformatics scripts written in python or R

    Python 5 3 Updated Nov 23, 2022

  • awesome-nanopore Public

    Forked from GoekeLab/awesome-nanopore

    A curated list of awesome nanopore analysis tools.

    MIT License Updated Nov 2, 2022

  • cbgenome Public

    The C. briggsae gemome and annotation files

    MIT License Updated Oct 26, 2022

  • pararun Public

    pararun is a python package to generate and run bash scripts for parallel or iterative jobs.

    Python Updated Aug 8, 2022

  • methyutils Public

    scripts to process methylation calls

    Python 1 Updated Jan 12, 2022

  • runsheng.github.io Public

    My website pages

    HTML Updated Jan 4, 2022

  • mitovar Public

    Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.

    mitochondrial ngs-data mtdna
    Python 4 2 Updated Jan 4, 2022

  • c24genome Public

    c24 genome track for ucsc

    HTML MIT License Updated Jan 20, 2021

  • lab Public

    Lab simple pages

    BSD 2-Clause "Simplified" License Updated Nov 13, 2020

  • nanotrack Public

    track for nanopore

    Apache License 2.0 Updated Feb 27, 2020

  • cbtrack Public

    C. briggsae mapping tracks

    HTML Updated Feb 17, 2020

  • taiyaki Public

    Forked from nanoporetech/taiyaki

    Training models for basecalling Oxford Nanopore reads

    Python Other Updated Oct 17, 2019

  • tair10 Public

    Forked from wikimanage/tair10

    a ucsc track hub for tair10 genome

    HTML Updated Jun 14, 2019

  • nanogan Public

    A nanopore read simulator with GAN

    Updated Apr 24, 2018

  • 3d-dna Public

    Forked from aidenlab/3d-dna

    3D de novo assembly (3D DNA) pipeline

    Shell MIT License Updated Apr 23, 2018

  • lastchain Public

    Lastal and chain

    Python 2 1 Updated Apr 13, 2018

  • Porechop Public

    Forked from rrwick/Porechop

    adapter trimmer for Oxford Nanopore reads

    C++ GNU General Public License v3.0 Updated Jan 11, 2018

  • LR_toolkit Public

    Long read python processing tools

    Python 1 1 Updated Sep 13, 2017

  • nvidia-fan-control Public

    Forked from allenwq/nvidia-fan-control

    Controlling Nvidia GPU fan speed on a headless linux computer

    Ruby Updated Jun 26, 2017

  • MultiQC Public

    Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Python GNU General Public License v3.0 Updated May 2, 2017

  • sspace_longread Public

    The modified version of sspac_longread.pl, add compatibility with blasr5.x

    Perl 4 2 Updated Mar 25, 2017

  • rosalind Public

    rosalind codes

    Python Updated May 13, 2016

  • vimrc Public

    My .vimrc file on server

    Vim Script Updated Apr 19, 2016