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Commits on Mar 19, 2024

• added test for kraken2

  erinyoung

  committed
  8d04011

• removed version for checkout

  erinyoung

  committed
  ddc69d1

Commits on Jan 30, 2024

• remove nextalign

  erinyoung

  authored
  23985eb

Commits on Jan 17, 2024

• remove primalseq

  erinyoung

  committed
  4088bbf

• add aci

  erinyoung

  committed
  250d2c5

• aci --false

  erinyoung

  committed
  b131ba0

• updated to nextclade

  erinyoung

  committed
  10e1ee1

Commits on Nov 2, 2023

• add freyja back in

  erinyoung

  committed
  feab547

Commits on Sep 27, 2023

• removed mpx_idt because not left/right

  erinyoung

  committed
  5b55808

• turned off aci and freyja

  erinyoung

  committed
  fa1c0e5

Commits on Sep 26, 2023

• vadr false

  erinyoung

  committed
  02c0e0d

Commits on Sep 19, 2023

• vadr false

  erinyoung

  committed
  1b4f358

Commits on Sep 15, 2023

• vadr false

  erinyoung

  committed
  ade9861

• allow aci and samtools ampliconstats to run

  erinyoung

  committed
  4c34836

• adding midnight primers

  erinyoung

  committed
  b97d754

Commits on Aug 31, 2023

• added -q to wget

  erinyoung

  committed
  af96cc4

• replaced nextflow clean with rm -rf

  erinyoung

  committed
  48ed1f1

• added nextflow clean

  erinyoung

  committed
  9465aa5

• test for nanopore reads

  erinyoung

  committed
  4956f3a

Commits on May 31, 2023

• simplified freyja script

  erinyoung

  committed
  91d4858

Commits on May 23, 2023

• added run name

  erinyoung

  committed
  1381181

Commits on May 16, 2023

• removed lfs

  erinyoung

  committed
  3ca1485

Commits on May 11, 2023

• removed iqtree

  erinyoung

  committed
  4bddc5d

• added in mpx tests

  erinyoung

  committed
  b82673f

Commits on Apr 18, 2023

• Update update_nextclade.yml

  erinyoung

  authored
  860617a

• Update update_nextclade.yml

  erinyoung

  authored
  260fc8a

• Update update_nextclade.yml

  erinyoung

  authored
  7e77730

• Update update_nextclade.yml

  erinyoung

  authored
  66c5daf

• Update update_nextclade.yml

  erinyoung

  authored
  90cb636

• Update update_nextclade.yml

  erinyoung

  authored
  8686f8c

• Update update_nextclade.yml

  erinyoung

  authored
  640f84c

• Update update_nextclade.yml

  erinyoung

  authored
  e90726e

• Update update_nextclade.yml

  erinyoung

  authored
  0eff500

• Update update_nextclade.yml

  erinyoung

  authored
  f476f59

• Update update_nextclade.yml

  erinyoung

  authored
  6b043b9

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