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Classic

Model-Agnostic Meta-Learning for Fast Adaptation of Deep Networks

Deep Residual Learning for Image Recognition

Diffusion model

Deep Unsupervised Learning using Nonequilibrium Thermodynamics

Denoising Diffusion Probabilistic Models

Improved Denoising Diffusion Probabilistic Models

DENOISING DIFFUSION IMPLICIT MODELS

Variational Inference

Flow++: Improving Flow-Based Generative Models with Variational Dequantization and Architecture Design

Auto-Encoding Variational Bayes

Autoencoders

Chemistry

Chemformer: a pre-trained transformer for computational chemistry

ChatGPT-powered Conversational Drug Editing Using Retrieval and Domain Feedback

Single cell and Spatia transcriptomics

CIForm as a Transformer-based model for cell-type annotation of large-scale single-cell RNA-seq data

scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data

scGPT: Towards Building a Foundation Model for Single-Cell Multi-omics Using Generative AI

Benchmarking and integration of methods for deconvoluting spatial transcriptomic data

Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution

Cell2location maps fine-grained cell types in spatial transcriptomics

Estimation of cell lineages in tumors from spatial transcriptomics data

Insitutype: likelihood-based cell typing for single cell spatial transcriptomics

Museum of spatial transcriptomics

Robust decomposition of cell type mixtures in spatial transcriptomics

Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

Spatial charting of single-cell transcriptomes in tissues

High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue

LLM and multi-modal

LONG RANGE ARENA: A BENCHMARK FOR EFFICIENT TRANSFORMERS

Improving Language Understanding by Generative Pre-Training

BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

Attention Is All You Need

Hierarchical Text-Conditional Image Generation with CLIP Latents

Contrastive learning

Unsupervised Feature Learning via Non-Parametric Instance Discrimination

Momentum Contrast for Unsupervised Visual Representation Learning

A Simple Framework for Contrastive Learning of Visual Representations

GenCo: An Auxiliary Generator from Contrastive Learning for Enhanced Few-Shot Learning in Remote Sensing

Protein

Imputing abundance of over 2500 surface proteins from single-cell transcriptomes with context-agnostic zero-shot deep ensembles

DDO

Functional Graphical Models: Structure Enables Offline Data-Driven Optimization

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