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Commits on Mar 25, 2020

• Removed gimmemotifs from install_requires

  msbentsen

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Commits on Mar 24, 2020

• Getting ready for 0.11.0; see CHANGES

  msbentsen

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Commits on Jan 16, 2020

• 0.10.1; Restructure of motifclust functions

  msbentsen

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Commits on Dec 28, 2019

• fix for motifclust parser

  msbentsen

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Commits on Dec 20, 2019

• Restructured parsers; added FilterFragments

  msbentsen

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Commits on Dec 18, 2019

• Restructure of parsers in TOBIAS

  msbentsen

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Commits on Dec 5, 2019

• Cleaned up ClusterMotifs script; changed to dynamic number of motif files

  msbentsen

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Commits on Dec 3, 2019

• Filterfragment update

  msbentsen

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Commits on Nov 29, 2019

• adding information about motifclust to the main script of TOBIAS

  

  anastasiia

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Commits on Nov 28, 2019

• initial add of filter fragments functionality

  msbentsen

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Commits on Nov 21, 2019

• 0.9.0: PlotTracks, rescale, small fixes

  msbentsen

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Commits on Jul 17, 2019

• Testing network

  msbentsen

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Commits on Jul 16, 2019

• Merge remote-tracking branch 'origin/master' into network

  msbentsen

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Commits on May 29, 2019

• --signal-on-x for PlotAggreggate; added - instead of _ in arguments

  msbentsen

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Commits on Apr 29, 2019

• Handled backwards compatibility of footprintscores

  msbentsen

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• branch to test out network functionality

  msbentsen

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• Getting ready for 0.4.0

  msbentsen

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Commits on Apr 28, 2019

• Merged from master

  msbentsen

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• Cleaned up setup dependencies

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Commits on Apr 11, 2019

• Added CreateNetwork to TOBIAS tools

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• Testing network functionality

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Commits on Apr 10, 2019

• Split motif names in bindetect output between name/motif_id/prefix

  msbentsen

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Commits on Mar 17, 2019

• 0.3.0: Getting ready for pypi release

  msbentsen

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Commits on Feb 27, 2019

• Bug fix of plot_bindetect being imported into bindetect_functions; added utility to convert aggregate logs to tables

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Commits on Feb 12, 2019

• Version 0.2: Changed estimation of background in BINDetect, introduced tobias-wide logger with verbosity, smaller fixes and reorganization in folders

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Commits on Jan 11, 2019

• Added --outfile utility to TFBScan, meaning changes to regions class and bedfile writer

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Commits on Jan 3, 2019

• Bug fixes and improvements in bound/unbound threshold setting for BINDetect; added minimal working example to test_data for use in snakemake and commandline; BINDetect plot plots all TFS with effec…

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Commits on Dec 12, 2018

• --help is automatically written if no parameters are given for subtools, --regions for FootprintScores is now required input.

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Commits on Dec 11, 2018

• Initial commit

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