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SergejRuff/README.md

Sergej Ruff

Data Science/Bioinformatics Enthusiast

Hi there, I'm Sergej. I'm a data scientist interested in statistics, bioinformatics, and biology. But hey, I'm not all about crunching numbers—I'm also a gamer, a bookworm, and I love going to the gym.

Lately, I've been diving into the exciting worlds of machine learning/AI and transcriptomics, particularly focusing on single-cell analysis.

📚 Education and Experience:

  • 2018 - 2022: Completed Bachelor's degree in Biology at Leibniz Universität Hannover.
  • 2022 - 2024: Master's degree in Biomedical Data Science at Medizinische Hochschule Hannover.
  • 1st December 2024 -: Research Associate/PhD Candidate at the University of Veterinary Medicine Hannover (TiHo).

🏆 Accomplishments

  • 15th September 2022: Completed Bachelor Thesis titled "Evaluation of Resampling Methods for the Analysis of Single-cell RNA-seq Data" at University of Veterinary Medicine Hannover.
  • January 2023 - September 2024 : Student Assistant -> 'Genomics and Bioinformatics of Infectious Diseases' group at the University of Veterinary Medicine Hannover, led by Prof. Dr. Klaus Jung [www.klausjung-lab.de].
  • 29th June 2023: Co-developed my first R package: RepeatedHighDim Version 2.2.0
  • 8th June 2024 - 29th October 2024: Master’s thesis titled "Virome characterization from unprocessed local and publicly available sequencing data" within the AG Computational Virology, led by Prof. Dr. Chris Lauber [TWINCORE].
  • 25th April 2024: Release of RepeatedHighDim version 2.3, incorporating network meta-analysis of gene expression data. RepeatedHighDim Version 2.3.0
  • 5th August 2024: First co-authorship on a paper [genes].
  • 5th November 2024: Virusparies version 1.0.0 (12th November 2024: CRAN release).
  • 14th November 2024: lovecraftr version 1.0.0.

💻 Languages:

Python3 R Bash
Python R Bash

💻 Packages And Other Tools:

🐍

Keras Matplotlib NumPy Pandas Plotly scikit-learn Scipy PyTorch TensorFlow

R

RStudio Community: R Markdown RStudio Community: tidyverse data.table ggplot2 devtools usethis limma DESeq2 Seurat

🌟 Others

Markdown

Distro and Text-Editor:

Ubuntu VS Vim PC RStudio
Ubuntu vsc Vim PC RStudio

🌐 Connect With Me:

Instagram Gmail 👉 [email protected]

Let's chat!

Pinned Loading

  1. Virusparies Virusparies Public

    Create Plots for VirusHuntergatherer virus discovery output (hittables)

    R 1

  2. lauberlab/VirusHunterGatherer lauberlab/VirusHunterGatherer Public

    Snakemake pipeline for running Virushunter and Virusgatherer

    Perl 4

  3. lovecraftr lovecraftr Public

    A curated collection of HP lovecraft stories for text analysis

    R 6 1

  4. Google-Scholar-Scraper Google-Scholar-Scraper Public

    A simple R script to scrape data from Google Scholar, extracting publication details like titles, authors, and citations for academic research and analysis.

    R

  5. MasterThesis MasterThesis Public

    Current Version of Code and Text for my Master thesis.

    R

  6. singlecell_undergrad singlecell_undergrad Public

    The undergrad project and code for university of hannover

    R