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1.5

@valeriuo valeriuo tagged this 20 Jun 13:50
* Added autoconf support to bcftools. See `INSTALL` for more details.

* `norm`: Make norm case insensitive (#601). Trim the reference allele (#602).

* `mpileup`: fix for misreported indel depths for reads containing adjacent
  indels (3c1205c1).

* `plot-vcfstats`: Open stats file in text mode, not binary (#618).

* `fixref` plugin: Allow multiallelic sites in the `-i, --use-id reference`.
  Also flip genotypes, not just REF/ALT!

* `merge`: fix gVCF merge bug when last record on a chromosome opened a
  gVCF block (#616)

* New options added to the ROH plotting script.

* `consensus`: Properly flush chain info (#606, thanks to @krooijers).

* New `+prune` plugin for pruning sites by LD (R2) or maximum number of
  records within a window.

* New N_MISSING, F_MISSING (number and fraction misssing) filtering
  expressions.

* Fix HMM initilization in `roh` when snapshots are used in multiple
  chromosome VCF.

* Fix buffer overflow (#607) in `filter`.
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