A Conditional Multifactorial Contingency (CMC) model to jointly learn the multifactorial effect in large-scale data.

HuggingLLM, Hugging Future.

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

High throughput, pain-free big data pipelines.

Devomics

single-cell nucleosome occupancy, methylome and RNA expression sequencing

consistent quantification of external RNA-seq data sets

Detection of aneuploidy using scRNA-seq data from human embryos.

Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversification during foregut organogenesis

Data and analysis scripts for our Embryo Timecourse paper.

single-cell Nucleosome Methylation Transcription

Publication Page for MPAL Paper 2019

Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis

Easily install and load packages from the tidyverse

Batch effects and the effective design of single-cell gene expression studies

This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.

scNMT-seq gastrulation

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

Java utilities for Bioinformatics

二代测序数据分析

A complete computer science study plan to become a software engineer.