SlicerNotebooks

Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

Running on Binder

All the notebooks can be run interactively in the web browser via Binder by clicking "Launch binder".

Download or clone this repository to your local computer.

Run the docker image as described here.

Download or clone this repository to your local computer.

Follow setup instructions here.

Name	Name	Last commit message	Last commit date
Latest commit lassoan Update Slicer to 5.0.3 Sep 20, 2022 063d8d1 · Sep 20, 2022 History 35 Commits
data	data	Fixed dependency installation in 03_Interactive_Widgets.ipynb for Win…	May 7, 2020
outputs	outputs	Add first notebook and Binder configuration	Oct 17, 2018
.gitignore	.gitignore	Ignore outputs folder in git commits	Oct 17, 2018
01_Data_loading_and_display.ipynb	01_Data_loading_and_display.ipynb	Update Slicer to 5.0.3	Sep 20, 2022
02_Data_processing.ipynb	02_Data_processing.ipynb	Update Slicer to 5.0.3	Sep 20, 2022
03_Image_Processing_using_SimpleITK.ipynb	03_Image_Processing_using_SimpleITK.ipynb	Update Slicer to 5.0.3	Sep 20, 2022
04_Segmentation.ipynb	04_Segmentation.ipynb	Update Slicer to 5.0.3	Sep 20, 2022
05_SlicerDockerNotebook.ipynb	05_SlicerDockerNotebook.ipynb	Update Slicer to 5.0.3	Sep 20, 2022
Dockerfile	Dockerfile	Update Slicer to 5.0.3	Sep 20, 2022
LICENSE	LICENSE	Initial commit	Oct 17, 2018
README.md	README.md	Update README.md	Jun 10, 2020
SlicerWeb.ipynb	SlicerWeb.ipynb	Update Slicer to 5.0.3	Sep 20, 2022
VolumeThresholdPlot.ipynb	VolumeThresholdPlot.ipynb	Update Slicer to 5.0.3	Sep 20, 2022
start	start	Set Jupyter shell to bash	Oct 17, 2021