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Commits on Oct 13, 2016

• Change default nn_method to 'kdtree'

  jacoblevine

  committed
  7f4bc18

• Add edge case to bruteforce_nn: when data is not worth breaking up, process in single chunk.

  jacoblevine

  committed
  b290adf

• Change default nearest-neighbor search method to brute force, implemented using multiprocessing and cdist. Better performance than sklearn in most cases. Also refactor parallel_jaccard_kernel to re…

  Show description for 99d6aad
  jacoblevine

  committed
  99d6aad

Commits on Sep 19, 2016

• Increment version

  jacoblevine

  committed
  fc5ff57

• Make louvain_time_limit a parameter to phenograph.cluster

  jacoblevine

  committed
  874a1ba

Commits on Sep 17, 2016

• Merge remote-tracking branch 'origin/master'

  jacoblevine

  committed
  d379f90

• Merge remote-tracking branch 'origin/master'

  jacoblevine

  committed
  1485a0d

Commits on Sep 16, 2016

• Merge remote-tracking branch 'origin/master'

  jacoblevine

  committed
  b362298

• Version 1.5: Allow input to phenograph.cluster to be a precomputed k-nn graph. Any square, sparse matrix will be interpreted as a knn graph.

  jacoblevine

  committed
  664070d

• Version 1.5: Allow input to phenograph.cluster to be a precomputed k-nn graph. Any square, sparse matrix will be interpreted as a knn graph.

  jacoblevine

  committed
  2c33dae

Commits on Aug 23, 2016

• Change default neighbors search algorithm from euclidean from kd_tree to auto

  jacoblevine

  committed
  bed232e

Commits on Apr 7, 2016

• Update signature of classify to use n_jobs as mechanism for parallel processing

  jacoblevine

  committed
  eec37a6

• Bug fix: n_jobs value was hard-coded in find_neighbors

  jacoblevine

  committed
  5af0567

Commits on Mar 15, 2016

• Version 1.4.1. Verify that self-neighbor is included before deleting

  jacoblevine

  committed
  0ea8c53

Commits on Feb 12, 2016

• Add command to terminate multiprocessing pool in core/parallel_jaccard_kernel. May improve 'too many open files' error when running repeatedly in a loop

  jacoblevine

  committed
  7f1c764

Commits on Feb 2, 2016

• Minor changes to README

  jacoblevine

  committed
  26a2dd3

• Add precision for monitoring modularity increase as input parameter to phenograph.cluster

  jacoblevine

  committed
  17b5aa3

Commits on Jan 19, 2016

• Implement CPU parallelism using multiprocessing

  jacoblevine

  committed
  40a5fc7

Commits on Jan 17, 2016

• Update project requirements: sklearn >= 0.17 and IPython is no longer required

  jacoblevine

  committed
  017ed55

Commits on Nov 25, 2015

• Add time limit (5 minutes) to Louvain loop in runlouvain())

  jacoblevine

  committed
  7f8136f

Commits on Nov 12, 2015

• Increment version. New in 1.3: Linux binaries are properly included

  jacoblevine

  committed
  9596d7c

• Change wildcards in setup.py package_data so linux binaries are included

  jacoblevine

  committed
  c83c9df

• Change convergence criteria to diff > eps, rather than straight comparison

  jacoblevine

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  fa94e39

Commits on Nov 2, 2015

• Fix typo in classify docstring

  jacoblevine

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  8509853

Commits on Sep 9, 2015

• Version 1.2: Add support for Linux

  jacoblevine

  committed
  02123e6

Commits on Aug 31, 2015

• Version 1.1: New default behavior for parallel neighbor search, which changes signature of phenograph.cluster to include a use_parallel boolean argument

  jacoblevine

  committed
  e5c8743

Commits on Aug 30, 2015

• Update docs and README to reflect Python version dependency

  jacoblevine

  committed
  59508bc

Commits on Aug 20, 2015

• Update file structure and setup.py for proper integration of Louvain binaries as package data

  jacoblevine

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  b350b53

Commits on Aug 13, 2015

• Update docs

  jacoblevine

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  0d96864

• Update docs

  jacoblevine

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  28e15bd

Commits on Aug 11, 2015

• Update README.md - include ref to paper

  jacoblevine

  committed
  e8fe1a3

• Update README.md again

  jacoblevine

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  cf06bf6

• Update README.md and .gitignore

  jacoblevine

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  3e0e5d6

Commits on Aug 6, 2015

• Fix file separator for Windows in core.runlouvain

  jacoblevine

  committed
  97adc24

• First commit

  jacoblevine

  committed
  1fddf25