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Commits on Feb 12, 2020

• Use native file dialog on MacOS for "igvtools" UI. Possibly fixes problem with Catalina.

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Commits on Feb 11, 2020

• git htsjdk from Maven

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Commits on Jan 26, 2020

• Add "sort by readname". See issue igvteam#419

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Commits on Jan 17, 2020

• fix import

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  0b0f075

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• Hervold igv (igvteam#744)

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Commits on Jan 15, 2020

• refine google storage test

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  066726a

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Commits on Dec 21, 2019

• oAuth init error messages

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  b953ed8

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Commits on Dec 20, 2019

• * Catch oAuth initialization errors

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  8e550c7

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Commits on Dec 19, 2019

• Add descriptive names for some blat tracks

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• Remove "bisulfite" from alignment experiment type menu. Not yet supported.

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  d1b5277

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Commits on Dec 6, 2019

• fix variant color preference labels (homozygous / heterozygous reversed)

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  05664e3

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Commits on Nov 30, 2019

• encapsulate experimentType to fix unit tests

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  committed
  faa3059

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• Alignment filtering (igvteam#737)

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  a2e023b

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• Mouse press & release handling

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  dcce3a1

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• Refactor start codon coloring scheme

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Commits on Nov 29, 2019

• remove diagnostic print statements

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  c2ed110

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• Update amino acids on translation table change.

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  committed
  1214b79

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Commits on Nov 24, 2019

• unit test maintenance

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  9f31039

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• Assign sample attribute values to merged tracks based on value of its members.

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  committed
  9476c1f

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• * Fix longstanding bug -- renaming a track causes it to loose its sample attributes as they are keyed by track name. Now the attribute key is the original track name, renaming has no effect on samp…

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Commits on Nov 22, 2019

• Null check for haplotype for alignment popup text

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  2410da6

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Commits on Nov 21, 2019

• remove dependency of blat soft clips on soft clip threshold. Minimum length is now a constant "20", which is what UCSC recommends. See issue igvteam#728

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  committed
  ea946a9

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• add some badges

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  committed
  66d838a

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• Add regex to recognize ucsc snp files (snpXXX.txt where XXX is a number)

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  committed
  f4d2f8d

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• Add minimum length of clipped sequence for blatting (20), as recommended by UCSC

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  committed
  af8dd2d

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Commits on Nov 20, 2019

• Enable copy-read-sequence when in paired alignment mode. Fixes igvteam#580

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  13b767b

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• Don't needlessly reset frames after search.

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  committed
  284e60c

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• Add support for igv webservice feature search

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  committed
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Commits on Nov 19, 2019

• Fix cytoband red-box drag. Fixes igvteam#674

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• Use "max" window coverage for sashimi plot. Fixes igvteam#579

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  committed
  6958643

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• restore gene list panel d&d

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  committed
  bf469f3

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• Double click (igvteam#727)

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  authored
  3a1cb8f

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• fix mouseClick problem in whole-genome view. Click now defined as press & release within 5 pixel radius, as opposed to 1 pixel radius

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  committed
  d91f6ea

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• refine ROI dragging behavior

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  committed
  2eb7112

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• Refine mouse click definition

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  committed
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