Add Redfield and Wilson datasets

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: oce
 Version: 0.3-1
-Date: 2011-05-26
+Date: 2011-06-01
 Title: Analysis of Oceanographic data
 Author: Dan Kelley <[email protected]>
 Maintainer: Dan Kelley <[email protected]>

NEWS

@@ -1,4 +1,5 @@
 0.3-1
+- add datasets wilson, redfieldNP, redfieldNC, and redfieldPlankton
 - change data(ctd) to be derived from data(ctdRaw)
 - change to monitor=FALSE for all reading functions
 - add longitude() and latitude()

man/redfieldNC.Rd

@@ -0,0 +1,30 @@
+\name{redfieldNC}
+
+\docType{data}
+
+\alias{redfieldNC}
+
+\title{Redfield's (1934) NO3 and total CO2 data}
+
+\description{Data digitized from Redfield's (1934) Figure 3, showing NO$_3$
+    dependence on total CO$_2$.  This dataset is used in Chapter 4 of Kelley
+    (2011).}
+
+\usage{data(redfieldNC)}
+
+\examples{
+data(redfieldNC)
+attach(redfieldNC)
+plot(CO2, NO3, xlab=expression(CO[2]), ylab=expression(NO[3]))
+slope <- 1/7
+abline(-275.5, slope, lwd=3)
+abline(-288.5, slope, lwd=3)
+}
+
+\source{Data digitized by Dan Kelley from a scanned copy of Redfield's (1934).}
+
+\seealso{See \code{\link{redfieldNP}} and \code{\link{redfieldPlankton}}.}
+
+\references{Kelley, 2011.  Oceanographic Analysis with R.  Springer Verlag.  To appear.}
+
+\keyword{misc}

man/redfieldNP.Rd

@@ -0,0 +1,29 @@
+\name{redfieldNP}
+
+\docType{data}
+
+\alias{redfieldNP}
+
+\title{Redfield's (1934) NO3 and PO4 data}
+
+\description{Data digitized from Redfield's (1934) Figure 1, showing NO$_3$
+    dependence on PO$_4$.  This dataset is used in Chapter 4 of Kelley (2011).}
+
+\usage{data(redfieldNP)}
+
+\examples{
+data(redfieldNP)
+attach(redfieldNP)
+attach(redfieldNP)
+plot(PO4, NO3, xlab=expression(PO[4]), ylab=expression(NO[3]))
+abline(0, 20, lwd=3)                   # line N:P = 20:1, as shown by Redfield
+}
+
+\source{Data digitized by Dan Kelley from a scanned copy of Redfield's (1934)
+    Figure 1, showing the dependence of NO$_3$ on PO$_4$.}
+
+\references{Kelley, 2011.  Oceanographic Analysis with R.  Springer Verlag.  To appear.}
+
+\seealso{See \code{\link{redfieldNC}} and \code{\link{redfieldPlankton}}.}
+
+\keyword{misc}

man/redfieldPlankton.Rd

@@ -0,0 +1,33 @@
+\name{redfieldPlankton}
+
+\docType{data}
+
+\alias{redfieldPlankton}
+
+\title{Redfield's (1934) Table II}
+
+\description{Contents of Redfield's (1934) Table II, containing columns for
+    sampled species, carbon content by weight (normalized to 100), Nitrogen
+    content by weight, and Phosphorus content by weight. This dataset is used in
+    Chapter 4 of Kelley (2011).}
+
+\usage{data(redfieldPlankton)}
+
+\examples{
+data(redfieldPlankton)
+attach(redfieldPlankton)
+par(mfrow=c(1,2))
+boxplot(Nitrogen)
+abline(h=16.7, col='gray')
+boxplot(Phosphorus)
+abline(h=1.85, col='gray')
+}
+
+\source{Data entered verbatim (sans italics for species name) by Dan Kelley
+    from Redfield's (1934) Table II.}
+
+\references{Kelley, 2011.  Oceanographic Analysis with R.  Springer Verlag.  To appear.}
+
+\seealso{See \code{\link{redfieldNP}} and \code{\link{redfieldNC}}.}
+
+\keyword{misc}

man/wilson.Rd

@@ -0,0 +1,37 @@
+\name{wilson}
+
+\docType{data}
+
+\alias{wilson}
+
+\title{Wilson's (1963) table of seafloor spreading}
+
+\description{Data transcribed from Wilson's (1934) Table 1, taking only the
+    first 3 columns, and only those rows for which Wilson reported an estimate
+    of spreading rate.  This dataset is used in Chapter 4 of Kelley (2011).}
+
+\usage{data(wilson)}
+
+
+\examples{
+library(OAR)
+data(wilson)
+attach(wilson)
+plot(Age, Distance, xlab="Age [My]", ylab="Distance [km]", xlim=c(125,0), ylim=c(0,4000))
+abline(0,4000/125)
+m <- lm(Distance~Age-1, data=wilson)
+## Wilson reports in cm/year; 1cm/y = 1km/1My * 1e5 / 1e6
+spreadingRate <- as.numeric(coef(m)) / 10 
+print(spreadingRate)
+abline(m, col='red')
+}
+
+\source{J. Tuzo Wilson, 
+    1963. Evidence from islands on the spreading of ocean floors.
+    \emph{Nature},
+    197(4867):536-538. 
+    \url{//dx.doi.org/10.1038/197536a0.}}
+
+\references{Kelley, 2011.  Oceanographic Analysis with R.  Springer Verlag.  To appear.}
+
+\keyword{misc}