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Add serializer for pandas dataframe (apache#30390)
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Add serializer for pandas dataframe

This adds an in-memory serializer for dataframes based on pyarrow. No
checking of size limits is being done and it is up to the user to
ensure the backend is configured to handle the potential size of
a dataframe.
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bolkedebruin authored Mar 31, 2023
1 parent 6bbe937 commit eec41ec
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70 changes: 70 additions & 0 deletions airflow/serialization/serializers/pandas.py
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#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
from __future__ import annotations

from typing import TYPE_CHECKING

from airflow.utils.module_loading import qualname

# lazy loading for performance reasons
serializers = [
"pandas.core.frame.DataFrame",
]
deserializers = serializers

if TYPE_CHECKING:
from pandas import DataFrame

from airflow.serialization.serde import U

__version__ = 1


def serialize(o: object) -> tuple[U, str, int, bool]:
import pyarrow as pa
from pandas import DataFrame
from pyarrow import parquet as pq

if not isinstance(o, DataFrame):
return "", "", 0, False

# for now, we *always* serialize into in memory
# until we have a generic backend that manages
# sinks
table = pa.Table.from_pandas(o)
buf = pa.BufferOutputStream()
pq.write_table(table, buf, compression="snappy")

return buf.getvalue().hex().decode("utf-8"), qualname(o), __version__, True


def deserialize(classname: str, version: int, data: object) -> DataFrame:
if version > __version__:
raise TypeError(f"serialized {version} of {classname} > {__version__}")

import io

from pyarrow import parquet as pq

if not isinstance(data, str):
raise TypeError(f"serialized {classname} has wrong data type {type(data)}")

buf = io.BytesIO(bytes.fromhex(data))
df = pq.read_table(buf).to_pandas()

return df
4 changes: 1 addition & 3 deletions setup.py
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Expand Up @@ -301,9 +301,7 @@ def write_version(filename: str = str(AIRFLOW_SOURCES_ROOT / "airflow" / "git_ve
]
leveldb = ["plyvel"]
otel = ["opentelemetry-api==1.15.0", "opentelemetry-exporter-otlp", "opentelemetry-exporter-prometheus"]
pandas = [
"pandas>=0.17.1",
]
pandas = ["pandas>=0.17.1", "pyarrow>=9.0.0"]
password = [
"bcrypt>=2.0.0",
"flask-bcrypt>=0.7.1",
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7 changes: 7 additions & 0 deletions tests/serialization/serializers/test_serializers.py
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Expand Up @@ -20,6 +20,7 @@
import decimal

import numpy
import pandas
import pendulum.tz
import pytest
from pendulum import DateTime
Expand Down Expand Up @@ -91,3 +92,9 @@ def test_params(self):
e = serialize(i)
d = deserialize(e)
assert i["x"] == d["x"]

def test_pandas(self):
i = pandas.DataFrame(data={"col1": [1, 2], "col2": [3, 4]})
e = serialize(i)
d = deserialize(e)
assert i.equals(d)

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