update changelog for v4.3.0

TrinityCTAT · Jun 29, 2024 · ff1bedd · ff1bedd
1 parent a092203
commit ff1bedd
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diff --git a/CHANGELOG.txt b/CHANGELOG.txt
@@ -1,4 +1,8 @@
-4.2.0 June 3, 2024
+
+4.3.0 June 29, 2024
+- bugfix w/ cigar-N-splitter, incorporating the required read group ID in each alignment entry - impacts long read calling sensitivity
+
+4.2.0 June 3, 2024 (removed due to cigar-N-splitter used in long reads not incorporating read group id - needed for haplotypecaller)
 - for faster workflow, set default boosting to 'none' and turned off blat_ED and annot pass annotations unless boosting is indicated.
 - ctat mutation wdl and Terra wrapper wdls updated
 - added bamsifter and strand-specific read normalization

diff --git a/Docker/Dockerfile b/Docker/Dockerfile
@@ -153,8 +153,8 @@ RUN curl -L https://github.com/attractivechaos/k8/releases/download/v0.2.4/k8-0.
 RUN apt-get update && apt-get install -y git
 
 WORKDIR $SRC
-ENV CTAT_MUTATIONS_TAG=v4.2.0
-ENV CTAT_MUTATIONS_COMMIT=014f1230604514167be282b3fc61017a06a3fb9e
+ENV CTAT_MUTATIONS_TAG=v4.3.0
+ENV CTAT_MUTATIONS_COMMIT=a092203384a665271f95980aad0830e1037f33bd
 RUN git clone https://github.com/NCIP/ctat-mutations.git && \
     cd ctat-mutations && \
     git checkout $CTAT_MUTATIONS_COMMIT && \