Merge pull request nf-core#491 from abretaud/genouest_up

Update GenOuest config

conf/genouest.config

@@ -8,7 +8,7 @@ params {
 singularity {
   enabled = true
   autoMounts = true
-  runOptions = '-B /scratch:/scratch -B /local:/local -B /db:/db'
+  runOptions = '-B /scratch:/scratch -B /local:/local -B /db:/db -B /groups:/groups'
 }
 
 process {
@@ -18,7 +18,7 @@ process {
 params {
   igenomes_ignore = true
   igenomesIgnore = true //deprecated
-  max_memory = 750.GB
-  max_cpus = 80
+  max_memory = 3000.GB
+  max_cpus = 160
   max_time = 336.h
 }

docs/genouest.md

@@ -8,10 +8,10 @@ To use, run the pipeline with `-profile genouest`. This will download and launch
 
 Nextflow is installed on the GenOuest cluster. Some documentation is available on the [GenOuest website](https://www.genouest.org/howto/#nextflow).
 
-You need to activate it like this:
+You need to activate it like this (or any more recent version in the same directory):
 
 ```bash
-source /local/env/envnextflow-19.07.0.sh
+source /local/env/envnextflow-22.10.4.sh
 ```
 
 Nextflow manages each process as a separate job that is submitted to the cluster by using the sbatch command.
@@ -22,7 +22,7 @@ Nextflow shouldn't run directly on the submission node but on a compute node. Ru
 srun --pty bash
 
 # Load the dependencies if not done before
-source /local/env/envnextflow-19.07.0.sh
+source /local/env/envnextflow-22.10.4.sh
 
 # Run a downloaded/git-cloned nextflow workflow from
 nextflow run \\