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A tool for finding the TAM and PAM sites of new Cas and transposon endonucleases from NGS screens

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USDA-ARS-GBRU/tamipami

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tamipami: a tool for finding the TAM and PAM sites of novel endonucleases

This tools takes a control fastq seqeuncing library and an experimental libray treeted with the endonuclease you are trying ti finda TAM /PAM site for. The two libraries are generated from a pool of sequences containing a guide site and a mixture of random bases flanking the guide region. When a endonuclease finds the PAM/TAM site anda guide RNA it cuts and those sequences are depleted in the sample library relative to the control.

Web Application

To launch a the streamlit web application locally at http://localhost:8501 run this commmand:

streamlit run app.py 

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A tool for finding the TAM and PAM sites of new Cas and transposon endonucleases from NGS screens

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