cuML - RAPIDS Machine Learning Library

R version of MACSQuantify data handler automate

Xlsx macro version of MACSQuantifyR

Interactive Cytometry Data Analysis

A binary tree algorithm for automatic gating in cytometry analysis

Diverse Cluster Ensemble in R

Codes related to activities on AV including articles, hackathons and discussions.

Cytometry clustering trees

Fall 2019 repository with course materials for JHU Advanced Data Science

Master the command line, in one page

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

CytoBackBone: an R package for merging of phenotype information from different cytometric profiles

Deep Learning-based Clustering Approaches for Bioinformatics

Testing for the presence of more than one mode in cluster distribution.

Python / Tensorflow / Keras implementation of Parametric tSNE algorithm

Extensible, parallel implementations of t-SNE

R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)

Code for the paper on t-SNE with variable degree of freedom

Code to run CellCnn analyses in collaboration paper by Krieg et al. (2018), Nature Medicine

The art of using t-SNE for single-cell transcriptomics

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

Simple tutorials using Google's TensorFlow Framework

TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)

[DEPRECATED] Docker containers for Bioconductor

A docker tutorial for reproducible research

Simple shiny app to test Shiny Server on openshift

R package with shiny authentication modules