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A python implementation of flux balance analysis to model microbial metabolism

Python 26 14 Updated Feb 25, 2023

Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University

Jupyter Notebook 39 16 Updated Dec 19, 2024

Match up paired end fastq files quickly and efficiently.

C 144 32 Updated Jun 2, 2024

Prediction of prophages from bacterial genomes

Jupyter Notebook 73 21 Updated Nov 10, 2023

Robs manual for the computational genomics and bioinformatics class.

HTML 228 61 Updated Nov 12, 2024