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yangxiaofeill authored Apr 28, 2021
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## The analysis_scripts folder includes the scripts used in our research work

- The files in the analysis_scripts as following:
- nextdenovo_run.pbs : the script used to assembly P. setigerum and P. rhoeas gneome based on Nanopore sequencing data by [NextDenovo](https://github.com/Nextomics/NextDenovo)
- `nextdenovo_run.pbs` : the script used to assembly P. setigerum and P. rhoeas gneome based on Nanopore sequencing data by [NextDenovo](https://github.com/Nextomics/NextDenovo)
- `scaffHic_breakhic_run.sh` : the script used to break the contigs with missing assembly based on Hi-C data by [scaffHic](https://github.com/wtsi-hpag/scaffHiC)
- `3d-DNA-whole_pipeline.sh` : the script used to scaffold genomes based on Hi-C data by [3d-DNA](https://github.com/aidenlab/3d-dna)
- `purge_dups-whole-pipeline.sh` : the script used to purge duplications in P. rhoease genome by [purge_dups](https://github.com/dfguan/purge_dups)
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