Mol opt #196
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run integration tests | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| types: | |
| - opened | |
| - synchronize | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 5 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| # - name: Remove flash-attn dependency | |
| # run: | | |
| # sed -i '/flash-attn/d' environment.yml | |
| # - name: Remove conda-pack dependency | |
| # run: | | |
| # sed -i '/conda-pack/d' environment.yml | |
| # - name: Remove chemlactica dependency | |
| # run: | | |
| # sed -i '/chemlactica/d' environment.yml | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| environment-file: test_environment.yml | |
| activate-environment: testenv | |
| auto-update-conda: true | |
| - name: Install local chemlactica package within Conda environment | |
| run: | | |
| pip install . # Install dependencies within the Conda environment | |
| - name: Run unit tests | |
| run: | | |
| python3 confirm_tests.py --run unit | |
| - name: list commits on PR | |
| run: | | |
| response=$(curl --request GET \ | |
| --url 'https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/commits' \ | |
| --header 'Authorization: token ${{ secrets.GITHUB_TOKEN }}' \ | |
| --header 'Accept: application/vnd.github.v3+json' \ | |
| --header 'Content-Type: application/json') | |
| echo "$response" > response.json | |
| - name: get second last commit | |
| run: | | |
| echo "Get length of the array:" | |
| length=$(jq 'length' response.json) | |
| echo "Get index of the second last commit:" | |
| index=$(($length - 2)) | |
| latest_commit=$(jq --argjson index $index '.[$index]' response.json) | |
| echo "Get commit SHA of the latest commit:" | |
| COMMIT_HASH=$(echo "$latest_commit" | jq -r '.sha') | |
| echo "$COMMIT_HASH" | |
| - name: read integration test status | |
| run: | | |
| echo "getting test status" | |
| TEST_STATUS=$(cat test_status.yaml | grep "${COMMIT_HASH}" | cut -d ' ' -f 2|| echo "NOT FOUND") | |
| echo "$TEST_STATUS" | |
| - name: check test status | |
| run: | | |
| if [ ! $TEST_STATUS=="PASS" ]; then | |
| echo "error: The test_status.yaml file indicates a failure for the second-to-last commit or incorrect commit tested" | |
| exit 1 | |
| fi |