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Snakemake workflow: dna-seq-gatk-variant-calling

Author: Muhammad Zain Practice

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This Snakemake pipeline implements the GATK best-practices workflow for calling small germline variants.

Usage

The usage of this workflow is described in the Snakemake Workflow Catalog.

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository and its DOI (see above).

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This Snakemake pipeline implements the GATK best-practices workflow

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  • Python 100.0%