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add visualization of k means clustering as excel format (TheAlgorithm…
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…s#2104)

* add visualization of kmneas clust as excel format

* style changes

* style changes

* Add doctest and typehint!

* style change

* Update machine_learning/k_means_clust.py

Co-authored-by: Christian Clauss <[email protected]>

* Update machine_learning/k_means_clust.py

Co-authored-by: Christian Clauss <[email protected]>

Co-authored-by: Christian Clauss <[email protected]>
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@beqakd @cclauss
beqakd and cclauss authored Jun 19, 2020
1 parent b9e7c89 commit d034add
Showing 1 changed file with 162 additions and 1 deletion.
163 changes: 162 additions & 1 deletion machine_learning/k_means_clust.py
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Original file line number Diff line number Diff line change
Expand Up @@ -47,12 +47,18 @@
k
)
5. Have fun..
5. Transfers Dataframe into excel format it must have feature called
'Clust' with k means clustering numbers in it.
"""
import numpy as np
import pandas as pd
from matplotlib import pyplot as plt
from sklearn.metrics import pairwise_distances
import warnings

warnings.filterwarnings("ignore")

TAG = "K-MEANS-CLUST/ "

Expand Down Expand Up @@ -202,3 +208,158 @@ def kmeans(
verbose=True,
)
plot_heterogeneity(heterogeneity, k)


def ReportGenerator(
df: pd.DataFrame, ClusteringVariables: np.array, FillMissingReport=None
) -> pd.DataFrame:
"""
Function generates easy-erading clustering report. It takes 2 arguments as an input:
DataFrame - dataframe with predicted cluester column;
FillMissingReport - dictionary of rules how we are going to fill missing
values of for final report generate (not included in modeling);
in order to run the function following libraries must be imported:
import pandas as pd
import numpy as np
>>> data = pd.DataFrame()
>>> data['numbers'] = [1, 2, 3]
>>> data['col1'] = [0.5, 2.5, 4.5]
>>> data['col2'] = [100, 200, 300]
>>> data['col3'] = [10, 20, 30]
>>> data['Cluster'] = [1, 1, 2]
>>> ReportGenerator(data, ['col1', 'col2'], 0)
Features Type Mark 1 2
0 # of Customers ClusterSize False 2.000000 1.000000
1 % of Customers ClusterProportion False 0.666667 0.333333
2 col1 mean_with_zeros True 1.500000 4.500000
3 col2 mean_with_zeros True 150.000000 300.000000
4 numbers mean_with_zeros False 1.500000 3.000000
.. ... ... ... ... ...
99 dummy 5% False 1.000000 1.000000
100 dummy 95% False 1.000000 1.000000
101 dummy stdev False 0.000000 NaN
102 dummy mode False 1.000000 1.000000
103 dummy median False 1.000000 1.000000
<BLANKLINE>
[104 rows x 5 columns]
"""
# Fill missing values with given rules
if FillMissingReport:
df.fillna(value=FillMissingReport, inplace=True)
df["dummy"] = 1
numeric_cols = df.select_dtypes(np.number).columns
report = (
df.groupby(["Cluster"])[ # constract report dataframe
numeric_cols
] # group by cluster number
.agg(
[
("sum", np.sum),
("mean_with_zeros", lambda x: np.mean(np.nan_to_num(x))),
("mean_without_zeros", lambda x: x.replace(0, np.NaN).mean()),
(
"mean_25-75",
lambda x: np.mean(
np.nan_to_num(
sorted(x)[
round((len(x) * 25 / 100)) : round(len(x) * 75 / 100)
]
)
),
),
("mean_with_na", np.mean),
("min", lambda x: x.min()),
("5%", lambda x: x.quantile(0.05)),
("25%", lambda x: x.quantile(0.25)),
("50%", lambda x: x.quantile(0.50)),
("75%", lambda x: x.quantile(0.75)),
("95%", lambda x: x.quantile(0.95)),
("max", lambda x: x.max()),
("count", lambda x: x.count()),
("stdev", lambda x: x.std()),
("mode", lambda x: x.mode()[0]),
("median", lambda x: x.median()),
("# > 0", lambda x: (x > 0).sum()),
]
)
.T.reset_index()
.rename(index=str, columns={"level_0": "Features", "level_1": "Type"})
) # rename columns

clustersize = report[
(report["Features"] == "dummy") & (report["Type"] == "count")
] # caclulating size of cluster(count of clientID's)
clustersize.Type = (
"ClusterSize" # rename created cluster df to match report column names
)
clustersize.Features = "# of Customers"
clusterproportion = pd.DataFrame(
clustersize.iloc[:, 2:].values
/ clustersize.iloc[:, 2:].values.sum() # caclulating proportion of cluster
)
clusterproportion[
"Type"
] = "% of Customers" # rename created cluster df to match report column names
clusterproportion["Features"] = "ClusterProportion"
cols = clusterproportion.columns.tolist()
cols = cols[-2:] + cols[:-2]
clusterproportion = clusterproportion[cols] # rearrange columns to match report
clusterproportion.columns = report.columns
a = pd.DataFrame(
abs(
report[report["Type"] == "count"].iloc[:, 2:].values
- clustersize.iloc[:, 2:].values
)
) # generating df with count of nan values
a["Features"] = 0
a["Type"] = "# of nan"
a.Features = report[
report["Type"] == "count"
].Features.tolist() # filling values in order to match report
cols = a.columns.tolist()
cols = cols[-2:] + cols[:-2]
a = a[cols] # rearrange columns to match report
a.columns = report.columns # rename columns to match report
report = report.drop(
report[report.Type == "count"].index
) # drop count values except cluster size
report = pd.concat(
[report, a, clustersize, clusterproportion], axis=0
) # concat report with clustert size and nan values
report["Mark"] = report["Features"].isin(ClusteringVariables)
cols = report.columns.tolist()
cols = cols[0:2] + cols[-1:] + cols[2:-1]
report = report[cols]
sorter1 = {
"ClusterSize": 9,
"ClusterProportion": 8,
"mean_with_zeros": 7,
"mean_with_na": 6,
"max": 5,
"50%": 4,
"min": 3,
"25%": 2,
"75%": 1,
"# of nan": 0,
"# > 0": -1,
"sum_with_na": -2,
}
report = (
report.assign(
Sorter1=lambda x: x.Type.map(sorter1),
Sorter2=lambda x: list(reversed(range(len(x)))),
)
.sort_values(["Sorter1", "Mark", "Sorter2"], ascending=False)
.drop(["Sorter1", "Sorter2"], axis=1)
)
report.columns.name = ""
report = report.reset_index()
report.drop(columns=["index"], inplace=True)
return report


if __name__ == "__main__":
import doctest

doctest.testmod()

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