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Maximizing the Gap Symbols of an Optimal Alignment
Solution to Rosalind Problem 083: Maximizing the Gap Symbols of an Optimal Alignment
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| #!/usr/bin/env python | ||
| ''' | ||
| A solution to a ROSALIND bioinformatics problem. | ||
| Problem Title: Maximizing the Gap Symbols of an Optimal Alignment | ||
| Rosalind ID: MGAP | ||
| Rosalind #: 083 | ||
| URL: http://rosalind.info/problems/mgap/ | ||
| ''' | ||
| # --------------------------------------------------------------------------------------------- | ||
| # SOLUTION COMMENTS AND EXPLANATION | ||
| # --------------------------------------------------------------------------------------------- | ||
| # This solution deserves more explanation than simple code comments, as the method to solve | ||
| # the problem seemingly has nothing to do with what is stated in the problem statement. | ||
| # | ||
| # The key thing to notice in the problem statement is that we want an optimal alignment | ||
| # and that there is no upper bound on the score associated with a match. Thus, we can | ||
| # assign an arbitrarily high score to matches and ensure that the maximum score corresponds | ||
| # to aligning the maximum number of symbols. | ||
| # | ||
| # The maximum number of aligned symbols between two sequences is precisely the longest common | ||
| # subsequence, and determining the longest common subsequence is a problem that we've already | ||
| # solved on Rosalind (it is a prerequiste problem for this one!). | ||
| # | ||
| # Now, since we have a free choice on the penalties associated with mismatches and gaps, | ||
| # choose a lowerpenalty for gaps, and match all non-longest subsequence symbols with gaps. | ||
| # Thus, we have one gap symbol for each nucleotide that is no part of the longest common | ||
| # subsequence in each problem. | ||
| # | ||
| # So: max #Gaps = |seq1| + |seq2| - 2*|longest subsequence| | ||
| # --------------------------------------------------------------------------------------------- | ||
|
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| from scripts import ReadFASTA | ||
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| def maximum_gap_symbols(v, w): | ||
| '''Returns the max number of gap symbols in an optimal alignment of v and w.''' | ||
| # Get the length of the longest common subsequence. | ||
| M = [[0 for j in xrange(len(w)+1)] for i in xrange(len(v)+1)] | ||
| for i in xrange(len(v)): | ||
| for j in xrange(len(w)): | ||
| if v[i] == w[j]: | ||
| M[i+1][j+1] = M[i][j]+1 | ||
| else: | ||
| M[i+1][j+1] = max(M[i+1][j],M[i][j+1]) | ||
|
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| # Apply the aforementioned formula with the length of the longest subsequence. | ||
| return len(v) + len(w) - 2*M[len(v)][len(w)] | ||
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| def main(): | ||
| '''Main call. Reads, runs, and saves problem specific data.''' | ||
| # Parse the input data. | ||
| v, w = [fasta[1] for fasta in ReadFASTA('data/rosalind_mgap.txt')] | ||
|
|
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| # Get the maximum number of gaps. | ||
| max_gaps = str(maximum_gap_symbols(v,w)) | ||
|
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| # Print and save the answer. | ||
| print max_gaps | ||
| with open('output/083_MGAP.txt', 'w') as output_data: | ||
| output_data.write(max_gaps) | ||
|
|
||
| if __name__ == '__main__': | ||
| main() |
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| >Rosalind_0508 | ||
| TTAGGTTAGGGAATTCTCCGCGTTTGCCCGCTCGTGGCATCCATCAGCGGCTTTATCTAC | ||
| AAACATAGGACGACGCTGGAGCCGGTAATTCAGCAGAGCTACACAGCCCCTAGCTTCTCG | ||
| GTATCCACGAAGTGTTACGCGGACCAACCATTACGTAGGAGTAGCCAATATCCATAGGTT | ||
| TGGACATCAAAGTCGAGTAGATACTGATGTGTGGGGTAAGCAGAACGGACTCGAAAATCG | ||
| CAGTGGGTCCAGGGACCATGGGCATCTAGGCGTTACCACCGTACTCACTCCGAACTAGCA | ||
| TAACACACGGTCGGTATACTGGTAACCTCTCAAAACACTGGTCGGAAGGATGGTTCCGCT | ||
| ATTAGATTATCGTGACTCTCCGTGTTAAACACCCACTAGTAATGCCTATCTTTCTACCGC | ||
| TCGCTCAGACCAGTCTCCCGCGTACGGTTCTATGCAAAGGACGTAACAAGACCTAATTTA | ||
| TGGGGTGTGTTTGACCTGGTCTGTCGTCACGCGTAGTCGTCGAGGGTGGTAGAACGATTG | ||
| GTTAATGACTTATGCATAGAAGCACATCTGTCGGGTCCACAGCCATGGTGGTCTATGTTC | ||
| AGACCAACACATGGCCCCAGCTGTGCTTTCCGGACGGGGAAATCTGGAATTCAGAACAGT | ||
| GCAAATGTTCCCAATTACCAGGAAAGTAATTTTACCTAGGCTTGGGATACCGATGTAAAC | ||
| GGGGCCGTGATGGTCCCGGAGATGCGTTTCGCTCATTTTTTGGCGGCTATAAAGCGTCTG | ||
| TGAAACCGTGCACTATGTTTGTGCCGTCAGGAGGTCTCTGGACTTCTATGTTTGGCATAT | ||
| TTAGTGACGGCATACCAGGAAGGAACAGGCCTTATTGCGTTGATGCCGGCACAACCCTGC | ||
| GAAGGAGTGAAACTGCGGGTTGTGAATAAATGATCACCTGTTCAAGGTCGTTTGTCCCCT | ||
| CAACTAAAAGACGGGGGATCCAAACACCTTCCTAGCCGATCAACTAAAGGTGCTTTGCTC | ||
| ATCTTTACTTCGAACCCCCCGTTCGCATGCATACCTGCTTGCATCCACCCTCATTGATCT | ||
| TCATTATTAACTATTAGGATGCAGATGGCATTGTTACTTTTCGTACAATCGGATACGCTA | ||
| GGTGATACCATGTTTATGGCTGCAATCACTGGCTTACGCATGCTTTTACGTCACGGGCAA | ||
| GACCCTATAAGATGTTCGCACCTCGCAATCGACTTCAGGGCTTGCGGCGTCAAGCTAGAG | ||
| TCCGTTATAATCTTCCATTAGTTCGCCTGACGATTTCCCTACGTGCTGCCGTTAAGAGCC | ||
| GCACGTGGAAGAGGAGAACAAGGAGTATTGCCTAAATGCCGTCAATAGCGAGGAATAGAC | ||
| CTGCTATCGATGGACCTATGACGTCAAGCCGACATGTGACGTTAGATCTCGACCAATGGC | ||
| CGAACGCTTCTCTCGCATGAGGTGCGCAGAACTTTACCGGTTAGTGCAGGACGTCCTAAT | ||
| GTTGTCGTGCTGACGGCTACGGGATTAGAGGTTGGATTCATTCAAATCCTACCTAAGCAC | ||
| CGCATAGAAATCCAACTGATCGACAGGTTCTACGGGGGGCTCTTTAGCACTAGCTGATAA | ||
| AGCGACCTCTTTAACTCATTTCCAATCTTAACAGTCAGGAGAAGTTGATTCTGCATGCAT | ||
| TAATTGGAAGGTGCCGCAAAGACTCTGCGCGTTTCCAAAGCTGACTAAGTTTCCCCAAAC | ||
| AAATGATTTTATCGGATTGGAGCTGATCCTCAGTCCCGCACATCTTCGGGCGACCTCGCC | ||
| CAGCTGTACAGTATATGACTTATCGTCGGGTCTTTTGCATCAACAACTTACGAGAAGCGT | ||
| CGACATCCCACATGGTAATCCCCGCTAATATCGGTACGTAGTTGCAAGACGAGGTTTCCC | ||
| GGCAGTCCATTTTGATGATTGAGTACTGTTCGAACCATCGATCGCCAGCACAGACGTTCG | ||
| TCTCCCCCGGTACCAACAAACAATGTCATTCGAGTTGCACAGCGAACAAAATGCCCGGGC | ||
| ATGGTAGACCAGTGATCTCCTTTTCCGACCGCTAGTATCGTTGTAACCAAACGCTCTATG | ||
| GATATACGTGGGGCGACCGACAGAAGCTGTGTCGCTTCTAGAGGAGCGCGAAACACGTCT | ||
| GATTTCATTTTCTTGACCCAAATCACTCCGTCGCGCCGCAAGTCGAAGATCTAGCCTCCT | ||
| GCTAGTCCTAATATCTCAATAAAGGCAATCGTACCGAGGTGCCAGGCGCCGTCGTCGGCG | ||
| ACATTAATGAGCGGTTCGATAAAACTCTATACGCCAGTGATGGCCTATCTACCCCGGGGC | ||
| ATCCGCTCGACTTATTGAAGACAAAGGAATCCTTAAGCAAGCCTATTTAGTGATTAGCGC | ||
| TGTGCGTGAATAGTCTGCGGCCACTGCTCGCGTTCAGCCGCCTCTCGCGGTGGGACTGAC | ||
| GCCGCCAGCCCCATATGAATCATCGAGGTAAAGTAGCAATGTAGAACGTTAGATCGCGAC | ||
| TATTGTACTGAAGCGACGCCAACAAGGGAAATCTTAGCTGCGGTCATTGATAAAGTCTCG | ||
| CCCATCGAACCATAGCGTTTTTAGAGGAGCTAAGCTTGTCGAAACAGCTATTATTAAGCC | ||
| AACCACGTATCTTAGGGTCCCCTGGCTCGCGTACCCATCTGCTCATAAACCCGTTGCGAA | ||
| TAGAACCAGCACTATCCGATGCTTATAGAGTCGCCAGTACACCATGCATAATTCGTCGCC | ||
| AAACCTGCGAGTTTAGAGTAGGATACTCTCAGAATCTTATTCACTTTTGCCGCCAGAGCC | ||
| TCCAAGCGTATATTTACGAGAAGCGCAAAAGTTCGATGCCTGGGGAATATAACCTCCCAA | ||
| ATGTAAGGCTATAGGGACCGACCAGTCTCCGCTCAAAGTGCTATTGGTGGTCGGTATAAA | ||
| AACCCTCGTGTAGCACGTTCTTGTGCAATGATAATACCTGTATCGGGAGGCGTCATCAGC | ||
| ACTGCCCGCGTATACCCGTAGTCTCTGCCATTCTTAATAATCAGCAGAGGTAACCAACAA | ||
| GAACAGACCATGTACTTTGGCACACGCTGCTTGCACAGTTGACATCCGGGCCTTACCTTG | ||
| ATGCCACCAAGAGGCTGCCCATTATGGAGCGTAGACCGGGCAGGGCCCGACTCTAGTTTA | ||
| ATAGGATCATCGTAAGGGTATTTTCGATGCGGGCGTACTCCAGATTGCGTAACCGACCAC | ||
| CGGGATTACGGCGCATGCGTCGGATTAAAACTCCCCTAAGGCCAACAAATCAGCACGGAG | ||
| AAGTCCGTGACTTGGACAACACTGGCCGAATGCTTGTGAATTGCCGCCGTGTTCAAGACA | ||
| TACCCGGGGTTGGCGACGACGCCATTGCGTGGCTCCATGAAAGTAGGACGCCGATACGAG | ||
| AAATTGTGGACGCCAGAGTGCATCTCTCCCTATATTGAAACTTAAATTAAGTATCTTGTC | ||
| TGGTTATCTCCTTCTCCGCTGCTTATAACCCTACATGGTATTGAAAGAGCTTATGCGCGA | ||
| GTAGTGTGCCATACAATCTGTCAATTATTAAAACCGGCCAAAGCATAGAGGCCAACCAAT | ||
| GACTGTTTAACTGACCGGTATGTACCGGTGGCACCCCAAGACCCGTTGTTATCAGCACTT | ||
| GTATATCACCTGTCCTCGTATGCTTTATACGCGCCCAGGCGGGAATGGTAGCATCTGCAA | ||
| GCTCTCAGTCATTTACGACGCATATGGGAACGTAGCTACTCGCTATGCTCCACGCACTTC | ||
| ATAGCACGAATGAAGGATGGCAAACCCCCCGGGATGAACGAACTATACCATTGGGGCTTA | ||
| CCTGTATAAGAGCGTGGAACACGTTGCGCTAGCTTTGTTGATCGCCATTATTTCAGTGTA | ||
| CACGATCCCCTGTGACGTACGCATAAATTGATGTCGAACAAGACCCTCCTATTGGCAACT | ||
| TCCATTAATCCCAAGATAATAATGCCACTGCCCAACTCCAAGCGGAAGATTCCGACTCTT | ||
| CAGGTGTCGTTCCGGTTTTAGCTGCGTTTGAGGCAGCACTCACGCTTCGACATACTATCC | ||
| ATGTTGCGATAGAGGTTTTACGCGTTTACATTCTGCTCGTCGATTAATTCAGCAGAAGAG | ||
| ATCACGCAATGTAACCTTTCTGCCGAGCAAAGCCGTCGAACCCTGGGCGTTCGGATGACC | ||
| GATGGTATATGGTCAGAATAATGAGCGAGCAGGACTACCTCGTCGATAGTTCGCTTAGAA | ||
| GATCAATATGAGTCTAATACCTCCGTGCCTTCCCATCGGCTTATTACAGAGAACGTTCAT | ||
| AGCGTACGGGGCATTCTGGTTCCAGCTATTATCGCCTTATGTCAGATAATCCATAGTACG | ||
| ACGCGACCTATCGCATACCCCATCTTTTACGCCGACCCCTGGCAATGGTGCAACTGGGGG | ||
| TCCAATTAGGTCAACGGTGGGACATTTTACGCCAGATACACTCCCGTGTTCCTACCATTA | ||
| AGATTCGCTTCGAGGGAGCATCATTCTCGAGGTGTTCTCATAATCTACGATTTATTATAC | ||
| CTATTAGTGCGAGTGTCGCGGCCGAAACATAGAAGAGGTACTGGGCCGAATTATAGAGGG | ||
| ACGAGAACCCGAGACTCTAGCTACGATCGGCGTTATATAATGGCACACACGCCCGCTCAT | ||
| AACCTCCTCTTCTACGACAGCCGGAGAGTCGGTCGAGCACCAGTTCAGGGTAACAAATGA | ||
| TACGTGCCAGCGTACACTAGAAACCTTCTATCGCGTTAACTCTGTACCCCGAATATAGGC | ||
| TTCGCTCGTGGAACCTTCACCCCCGTTCATTGGGCCCCCGCCGACGACATTGTTCAAGGG | ||
| GCAATGTATGTAGAAGACTCACGCGCGTTAAACTACTCTACATTTTGCAGCAAAGTGCTA | ||
| TTTAGGCATAACCGGTTATTCGGTTGTCACCCAGCTTAT | ||
| >Rosalind_2416 | ||
| TATTATATGGTCTTTTGTTAGTTATGACAGCCACGGGCAATAAATAGGCGACGCCGATAG | ||
| GTATTTACAAATCATACGAAGGGCCGTCTGCCAGGCTCTACGGATCAAACCGAGAGTTAG | ||
| ATGGTGGCGCATCGGGTAATCTTTCGCCGAAATTCGGGCGGGCTCTAAGGGTGACAGCGT | ||
| CTATGTGGCCAGAGCTGCTGCATTCTTCATTGAATATGACTTAATATGTCAAGTCTTCTA | ||
| TATGCATGAACTCTGCTAAGCAAGGCAAGGCTTGGCTTATATGTGCCTCCCATCACGTAC | ||
| AATCCTCCCACAGGTGCGAGAACCTAGCGTGTGGGCACGCGTATGAAGGTGAATCTGACC | ||
| GGGCACTCGCAATACGAACCCGCTCGAGAAGCATATAGTCCCGGCCCTGGCGAATTCTGT | ||
| CTTGAGGTAGGAAAGTTTTCCATCCGGTGCCCCAACGACGGTAGGACATCTACCTTTAAG | ||
| GTGCAACCACCGCCGAATTGAATCTCGTTAGGGTTTTCCGCTCTGTGCATATGACTGCCA | ||
| CGGGAGAGGTATTTCCGCCATATAATCATGTGAGTCAAAGTCGACGTATCTAAACGCGTC | ||
| AGCTGCAGCAAGGATGGCGGGTTAAGTAGCCTCACTGGTCCTTCGAGCAGATGACCTGGT | ||
| GCTCTTGCTAAGCAGGAGCAACTCTGATCCGGCCATCGTGCATGAGGCTATTCGTAGTTT | ||
| TCTTCCGCGCATTAAATAGCTAAGATGTCCATTAACCTTTAAGGAATTACTATCACTCAA | ||
| GGATACGCGAATTTTTGTCTGAGGGACGACATAATGGCGAATTGGTTTGGGTCCTTAAGT | ||
| TGGTCGGTAGCTTATAGTGCTCCCCAGCATATGAATATCGAGACGGGTGGTACTTGCATC | ||
| TTATGTATCAGCTCCCGGTCGGTACTGTCAGAACCATTTTTCTAGATGGTCCCATCTTCG | ||
| TGTCTGGTCGAGGGATGTCCGTCCGTCTTCTAATCGTTGTAATGGAGGTCACACAGAGGG | ||
| CTAGAGAGGTTACGGTGGCACCGCATCGTATAGTGGCCGCCCCCAGGTCAGTGTAGATTA | ||
| CAACGGCCCCGTACAGCGCACTAAATTCGGCACGTCGCTTTAAACACTCGCGATTAGCTT | ||
| CACGAATATGCGCTGACACAAAAGTTAGCCAGTTTGAGACTATTTTTTCATGTATGTCTG | ||
| AATGCTAGCCTCCTTGGTTGCCGAACGAACACTGGGGGCCCACATCTGATAACCCCGAAT | ||
| AAAGGGATTACTTAAGCGTATGACCCCAAAACCGCGTGGTAAGGTTCAACGTACCGATAC | ||
| ACGTGATACTTCGACGACTTGGGATTCCCCCTCTCAGAGTCCATGGTTGTCTTAATGAGA | ||
| AAAAATATCATTAACGACGGTGGGGCAATACCATATTTCGCAGGTTGAGGCCAAGTATCC | ||
| GAGGCGCATAAAACTTACTCCGTGAATACGGAGTTCGAACTTTGTCGAAATGCCCCTCGC | ||
| TTTGATTCACTCATGTTGCACTGTAGGCGGAACGCCACCCTAGCAACTATTGCTCCCAGA | ||
| CCGAGCTCGAACTCTAATATTGCATAACACCACGGTTTAATATGGGAATAGGCGGACGTT | ||
| AAGAACCTCATTCGCACGATAGTTGGCTGCAGGACCACACTACGTCTTCCATATTGGACT | ||
| AGCTTCAGTTTCACATGATTTAGGTATGCTATTAATGTAATAGCTGGGGGATTACCCTGG | ||
| TCGATTCCAAGTGCTCCGCTATGGAGGCTGCGGCGCATATCTTAACCTGAACGTACCGTG | ||
| GAGGTAGCCGCCCTACAAACGTCCCCCTAAGCTGTGGATTACTCCACAGGGATTAGGTGT | ||
| GCCTTACTCTTTTAATGGGTCTCAGCCGTCTTCCGAGATATCCAGGTGGTTTTGGTAATC | ||
| CGGTGCAAGAGTTAATAGAATCAGACCGGACCCAGACCCGAGTAGGCTCCTCTATTAGTT | ||
| CGTTGGCGTTGTAAGCGAGTCTAAAGGGCCAGATATTAGAACGGTCCGCATCTGGTGTGA | ||
| TAAGCTATTGAGGAAAGACGTCGCGCTCTTTCGGACTCTCGGCCGAATGCTAAAGCTTCT | ||
| GTTCTTAATCTCATAGCTTTACACTCCTACTAGGTTCCCGCTGCAGGTTCAGGGGACGCA | ||
| TAACGTTCAATGTGCAATGCGAAGCCCAGGAGTCTTCCCTTGAGGAATCCTTATTCGTGC | ||
| ACCGGAGTGACCTCGGTGGCGTGAGCCCTACTAGCAAATTAACCTCATGAGATCTATTTG | ||
| TAATATAGTCTTAGTGCGTGCGACACCTGAGCGCCCGATACAGTTCGGACCGTGTCACAA | ||
| CATTGGGTAGTTCCATGTCTCAGGTGGCTCCGATTTTCAAATAATTCTGGTCGATCAACA | ||
| AGGGACCTAGCAGTCTACCCCTGATTTTCGGCGGGAAGGTCGTTGTAGGCAGTGTTCTTC | ||
| CACCCTAGTTTACAAGGAAGAGCCCAGCGAAGTAACTTTCAGTGAATCCCATCACTTCCA | ||
| ATCATCAACGACACTTGCTTACACGTAGTCTGGGCGTGGAATGGTAGCTAACCATTCAAC | ||
| ATCTTCGACTTTATAAGTTTATTTTGCCGTGGTTATTTAGCGTAGGACACAAAGCAGGAC | ||
| TAAGACCTGCACTCCCCGACGTACTGCCGGCCGGACCGTGTTCATCTACGGGGATGTCCT | ||
| ACATCGCACGAGATTTGCCACGAAGAGGCGCTTATCGGGTCGGGCATACCCTGGTGAACT | ||
| ACCCGTTTCTTGGAACTTTCATTTCAGAGCATTCCTGACTGTCCCTTATTAACTCGATAA | ||
| TCCATCCACACTCACTAATTGTGTCATCGGCAGCTCACTCATGGAGGTAGTATGGAAACC | ||
| GATGGATAGTACCCTGTATTACCCGTCTGTAACTTTTTGCAGTATGAACGCTTGGTCGAG | ||
| CAGCATAACTCGTACCTAAAGCTAGCCTAGCCTGACACTCAAGCGCACCGCTCTCAGACG | ||
| GCCACCGTTTTGATGATGGTCTGTACACAGATACTTCCTACATGGATGTTACGTTAAAAG | ||
| TAATTACTGTGTACTGCACTGGGTAATGGGCACAATGAGACTTATCATTCACCGCATCGG | ||
| GCCTATCCACCATTCCTTACCTTGTACGTGACGGTACGCCACACTTATACGCTCTACGTG | ||
| ATAAGGTCTCGAGGTCGTGCGTTCAACGAAGCGAGCCCAAACCAGCACTCAGGGAATCTT | ||
| TTGCGCATAGGTGAAGAATTGGAATTAACAAGGTGGAGGTGACTGCACGACGTTCTGAGT | ||
| CACTTACCGTAGTAAAAATAGAGACCAACCAAACTGGCTGATTACTTATTCAAAACCATG | ||
| TGCTTCAATTTTCTGACGCCCCGCCCTGAAAAGCGTTAGCATGGCTACGGAGAGCTGCAT | ||
| TGTGAAGGAGATGCGCGTTGAATCAAATTCGCCTGGACGAAAGTCGCGTCTCCCCCTAAT | ||
| ATGCTAGCTAGCTTGTGATTCCTCATGTACTACTGGACCCTTGCCTTGCATCACTTAGTG | ||
| CCCAAAGCGCGTACCTTTTTGTCCACCGATTTTAATAACGGCTACTTGAGAGTTTGGGGG | ||
| GTAAAGGCCTGAAAGGCAGCGCTCTGATACGGTACCCTAGGGTGGTACCCGTAATACTTA | ||
| AACATGTAAAGTTCGATCGTACCTTCGCTTATCGGCTGCCTCGACGGCAGAGTCACTCCG | ||
| AGCGGTGCAGTGCGCCTCAACAGTAGGGGACTTTGTCTAAACGTAGGGACGCAATGATCT | ||
| GGAGAATCGCGAGCATCTCTTCTATTTGGGATGCGGACTGGCTGCCCTGAAGGGCACAAT | ||
| AATAGACCCTGCGTTGTAAATACGCCTATTAGACACGCATCCTCCCGTTATACGTTTTGT | ||
| TCCCCCCACCATCTCCCAACCAGGCAGTCGTAAGCGTCGGAACCCGGTGCAGTTGTGAAT | ||
| CAATTCACGGCTTGTTTAAGAATTAGTCAAGTAAGCCGACTGTTTCCAAGCTAAGGGAGT | ||
| TGAACCAGGACATCGATTTTACAAGACAATTGCAGCTCCATCATCTTGAGATGCGCACGG | ||
| AGTGGCGATAAAAAGCCAGTCGACACCCGCGAAAACCTCTATACGGCCCAGATCAGTCAC | ||
| ACGGAGTCTGACAAGTAGCTTACGGCACTCCGGAATCACAAGAGCTCGGCTGATCTCGAG | ||
| GGGCAGCTTTTATCTGACTTGTGCGTTTGGGGTACCAGACTGGCCTTGGGCTGAACGCAT | ||
| GTGTCAGTGATGGCGGTGGTAGGCGGGAAAACGTGTCGGACTGACTACTGAAAGTCCAGA | ||
| TTGTTCAGAGTCTACTAGTCTGGGGCGATTCTATGCAGCTGCACCGCGCATCCTACTGCA | ||
| GACTAGATGATCGCGCCCTGGTCGACTAGGGCAGTGTCACCCCTTACTCACCATCCTCGA | ||
| CATGGGCAAATGGTCTATGAGCGTGCTGTGCTGGCGCGGGAGAGCATAAGAAGCAAATTC | ||
| CGAGACTTTCCACACACAGACCCCTCTGCTCGACCCCACGGAATGTACATCATT |
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| 3337 |