Project aim is to find the most relevant functional protein to a given list of proteins. Currently we are using five different species (A. thaliana, D. melanogaster, H. sapiens, S. cerevisiae and S. pombe) for model organisms, while we integrated two orthologous and protein-protein (PPI) databases to our tool. Details can be found in the script and below.
Identical version of this tool can be found and edited here: http://www.orthologfindertool.com
Current Public version is 1.5
Please send any comments to: Zoltán Dul [email protected]
This Code uses scripts from ...
Blagoj Janevski's ip2country Script under GNU GPL v2 license (http://phpweby.com/software/ip2country)
jQuery v1.11.2 under MIT license
jQuery DataTables v1.10.5 under MIT license
Protein information from published articles ...
Ashburner et al, 2000 PubMed id: 10802651 (Gene Ontology, for A. thaliana)
Mortetto et al, 2013, PubMed id: 24217298 (for D. melanogaster)
Graml et al, 2014, PubMed id: 25373780 (for H. sapiens)
Jorgensen et al, 2002 PubMed id: 12089449 (for S. cerevisiae)
Neumann et al, 2010, PubMed id: 20360735 (for S. cerevisiae)
Hayles et al, 2013, PubMed id: 23697806 (for S. pombe)
Contains informations from the following external databases:
BioGRID
COG/KOG
eggNOG
Ensembl BioMart tool
HomoloGene
intAct
inParanoid
KEGG
orthoMCL
PomBase website (http://www.pombase.org/)
UniProt.org Tools (http://www.uniprot.org/)
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
Please always copyleft your redistirubtion :)