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Exploring Long-Term Prediction of Type 2 Diabetes Microvascular Complications (ML4H Workshop 2024)
Drug Evaluation using Gene Expression and single-cell Foundation Models
Bringing bio (molecules and more) to the Hugging Face Datasets library
Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
Geneius is a powerful command-line tool leveraging Anthropic AI's Claude API to help you search through scientific literature and extract evidence for disease-gene associations.
PyTorch Lightning + Hydra. A very user-friendly template for ML experimentation. ⚡🔥⚡
SPECTRA: Spectral framework for evaluation of biomedical AI models
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
A comprehensive guide on how to create beautiful scientific figures for technical publications, presentations, and posters
scPerturb: A resource and a python/R tool for single-cell perturbation data
Tabular Deep Learning Library for PyTorch
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Learning Single-Cell Perturbation Responses using Neural Optimal Transport
Python package to map gene names between different naming conventions
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Pen and paper exercises in machine learning
ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library.
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
This is the repository for the variant impact predictor VarIpred.
Cancer Immunotherapy Data Science Grand Challenge at https://www.topcoder.com/challenges/0494170d-3136-4139-89e0-6c1b009c66a2
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
Solutions to Linear Algebra Done Right, by Sheldon Axler.
A platform for managing machine learning experiments
Examples of how to create colorful, annotated equations in Latex using Tikz.