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Commits on Jun 29, 2017

• Expand tot_seqs variable to long long

  Show description for a61b1dc
  jmarshall

  committed
  a61b1dc

Commits on May 19, 2014

• Release bwa-0.7.9-r782

  lh3

  committed
  e4752b3

Commits on May 24, 2013

• r397: multi changes/bugfixes to bwa-backtrack

  Show description for 599e840
  lh3

  committed
  599e840

Commits on May 2, 2013

• Reduce dependency on utils.h - new malloc wrapping scheme.

  Show description for 96e445d
  

  Rob Davies

  committed
  96e445d

Commits on Apr 29, 2013

• Ensure exit status of 1 if given invalid options or index files are not found.

  Show description for 0aa7e0a
  

  Rob Davies

  committed
  0aa7e0a

Commits on Mar 8, 2013

• Merge branch 'master' into master_fixes

  Show description for aabd990
  

  Rob Davies

  committed
  aabd990

Commits on Mar 5, 2013

• r329: ditch stdaln.{c,h}; no changes to bwa-mem

  Show description for 98f8966
  lh3

  committed
  98f8966

Commits on Mar 1, 2013

• Merge branch 'master' into master_fixes

  Show description for 3d33ab0
  

  Rob Davies

  committed
  3d33ab0

Commits on Feb 23, 2013

• cleanup index loading code

  lh3

  committed
  cfa7165

Commits on Feb 12, 2013

• removed color-space support

  Show description for 6ad5a3c
  lh3

  committed
  6ad5a3c

Commits on Dec 16, 2012

• Use wrapper functions to catch system errors

  Show description for b081ac9
  

  Rob Davies

  committed
  b081ac9

Commits on Apr 7, 2012

• API: aln seems working

  lh3

  committed
  a1abfe9

Commits on Mar 29, 2012

• check *.64.bwt first and then *.bwt

  lh3

  committed
  d33abf1

• Tim's suggestion suffix file name with .64

  lh3

  committed
  bdc953c

Commits on Nov 24, 2011

• fixed a long-existing bug in trimming

  

  Heng Li

  committed
  dec584d

Commits on Nov 12, 2011

• bugfix: bwa-short MT does not work (by Peter)

  

  Heng Li

  committed
  2f3cdcd

Commits on Oct 20, 2011

• nothing

  

  Heng Li

  committed
  098f44c

• no change

  

  Heng Li

  committed
  156852b

• aln seems working

  

  Heng Li

  committed
  2d2db5d

Commits on Jul 10, 2011

• Remove sequences marked to be filtered by Casava-1.8 with bwa aln -Y

  Show description for db59a60
  RoelKluin

  committed
  db59a60

• Revert "In Casava 1.8 the fastq output changed, the name had a space which bwa"

  Show description for 8f115a8
  RoelKluin

  committed
  8f115a8

Commits on Jul 8, 2011

• In Casava 1.8 the fastq output changed, the name had a space which bwa

  Show description for 36cd4f9
  RoelKluin

  committed
  36cd4f9

Commits on May 4, 2011

• applied patches from Alec Wysoker

  

  Heng Li

  committed
  243e735

Commits on Apr 7, 2011

• speed up multi-threading

  

  Heng Li

  committed
  8d6b859

Commits on Jan 15, 2011

• Added barcode support

  

  Heng Li

  committed
  51d354c

• Added an option to accept Illumina 1.3+ fastq

  

  Heng Li

  committed
  10721ca

Commits on Jan 14, 2011

• Update to the latest modfication 0.5.9rc1-2. Update ChangeLog

  

  Heng Li

  committed
  5e30884

• Imported from my local bwa repository, the master repository.

  

  Heng Li

  committed
  007c3eb

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