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1. stoneTrees stoneTrees Public

   Integrating 'omics data with biological networks by solving Steiner Tree problems

   R 3 3

2. metaDEGth metaDEGth Public

   metaDEGth: meta-analysis of Differentially Expressed Genes using parametric, empirically-derived P-value distributions

   R 1

3. RcppORtools RcppORtools Public

   Rcpp integration for google's ORtools

   C++

4. currentFlowCentrality currentFlowCentrality Public

   A generalisation of network closeness and betweeness to all paths rather than just geodesics

   R

5. My standard Rprofile My standard Rprofile

   1

   #Including arch is useful for times that one might be running two versions of R on different architectures. e.g. on new M1 Macs

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   libDirectory <- paste(c("~/Rlibs/", R.Version()$minor, "/", R.Version()$arch, "/"),collapse="")

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   .libPaths(libDirectory)

   4

   5

   #Taken from bioconductor. This removes the need for using biocLite to install packages, which would be at the top of my list of "Bad Things About R"

6. .tmux.conf .tmux.conf

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   #Set command prefix to be like screen

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   set -g prefix C-a

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   unbind C-b

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   bind C-a send-prefix

   5