update requirements, run som optional tests on travis

.travis.yml

@@ -4,7 +4,5 @@ python:
   - "3.4"
   - "2.7"
   - "2.6"
-# command to install dependencies, e.g. pip install -r requirements.txt --use-mirrors
-#install: pip install -r requirements.txt --use-mirrors
-# command to run tests, e.g. python setup.py test
+install: pip install -r ci_requirements.txt --use-mirrors
 script: nosetests -v

ci_requirements.txt

@@ -0,0 +1,15 @@
+Cython==0.24.1
+numpy==1.11.2
+numexpr==2.6.1
+bcolz==1.1.0
+tables==3.3.0
+intervaltree==2.1.0
+lxml==3.6.4
+openpyxl==2.4.0
+pandas==0.19.0
+#psycopg2==2.6.2
+#PyMySQL==0.7.9
+#SQLAlchemy==1.1.2
+Whoosh==2.7.4
+xlrd==1.0.0
+xlwt-future==0.8.0

optional_requirements.txt

@@ -1,15 +1,15 @@
-Cython==0.23.4
-numpy==1.10.1
-numexpr==2.4.6
-bcolz==0.12.1
-tables==3.2.2
+Cython==0.24.1
+numpy==1.11.2
+numexpr==2.6.1
+bcolz==1.1.0
+tables==3.3.0
 intervaltree==2.1.0
-lxml==3.5.0
+lxml==3.6.4
 openpyxl==2.4.0
-pandas==0.17.1
-psycopg2==2.6.1
-PyMySQL==0.6.7
-SQLAlchemy==1.0.9
-Whoosh==2.7.0
-xlrd==0.9.4
+pandas==0.19.0
+psycopg2==2.6.2
+PyMySQL==0.7.9
+SQLAlchemy==1.1.2
+Whoosh==2.7.4
+xlrd==1.0.0
 xlwt-future==0.8.0

tox.ini

@@ -7,23 +7,19 @@
 # uncomment to test with only minimal requirements
 #envlist = py26, py27, py34, doctests, docs
 # test with all optional requirements
-envlist = {py26,py27,py34}-optional, pypy, doctests, doctests-optional, docs, lxml, mysqldb
+envlist = {py26,py27,py34}-optional, doctests, doctests-optional, docs, lxml
 # trick to enable pre-installation of numpy and numexpr
 indexserver =
     preinstall1 = https://pypi.python.org/pypi
     preinstall2 = https://pypi.python.org/pypi
 
 [testenv]
-# N.B., set these locally
-#setenv =
-#    C_INCLUDE_PATH = /usr/lib/openmpi/include
-#    HDF5_DIR = /usr/lib/x86_64-linux-gnu/hdf5/openmpi
 commands =
     nosetests -v --stop petl
 deps =
-    optional: :preinstall1: Cython==0.23.4
-    optional: :preinstall1: numpy==1.10.1
-    optional: :preinstall2: numexpr==2.4.6
+    optional: :preinstall1: Cython==0.24.1
+    optional: :preinstall1: numpy==1.11.2
+    optional: :preinstall2: numexpr==2.6.1
     -rtest_requirements.txt
     optional: -roptional_requirements.txt
 
@@ -51,9 +47,9 @@ commands =
     nosetests -v --with-doctest --doctest-options=+NORMALIZE_WHITESPACE petl/transform/intervals.py
     nosetests -v --with-doctest --doctest-options=+NORMALIZE_WHITESPACE petl/io/bcolz.py
 deps =
-    :preinstall1: Cython==0.23.4
-    :preinstall1: numpy==1.10.1
-    :preinstall2: numexpr==2.4.6
+    :preinstall1: Cython==0.24.1
+    :preinstall1: numpy==1.11.2
+    :preinstall2: numexpr==2.6.1
     -rtest_requirements.txt
     -roptional_requirements.txt
 
@@ -70,7 +66,7 @@ basepython = python3.4
 setenv =
     PYTHONHASHSEED = 42
 deps =
-    lxml==3.5.0
+    lxml==3.6.4
     -rtest_requirements.txt
 commands =
     nosetests -v --stop petl
@@ -81,7 +77,7 @@ setenv =
     PYTHONHASHSEED = 42
 deps =
     MySQL-python==1.2.5
-    SQLAlchemy==1.0.9
+    SQLAlchemy==1.1.2
     -rtest_requirements.txt
 commands =
     nosetests -v --stop petl