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dev-lang/R: bump to 3.3.2, thanks to Neil Shephard (bug #598834)
Package-Manager: portage-2.3.3
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Denis Dupeyron
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Dec 8, 2016
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,4 @@ | ||
| DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc | ||
| DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e | ||
| DIST R-3.3.1.tar.gz 29848329 SHA256 3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512 d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd WHIRLPOOL 6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151 | ||
| DIST R-3.3.2.tar.gz 29440670 SHA256 d294ad21e9f574fb4828ebb3a94b8cb34f4f304a41687a994be00dd41a4e514c SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482 WHIRLPOOL a68112df87552cc6ca8cd6b78b99dda2a22b8f4cfcd87a4512d541d25ef21358ede1ba71b4d7e9f274bf4e4340de18355a777d9af2ed41c0a498fa11d91cf0d8 |
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| # Copyright 1999-2016 Gentoo Foundation | ||
| # Distributed under the terms of the GNU General Public License v2 | ||
| # $Id$ | ||
|
|
||
| EAPI=5 | ||
|
|
||
| inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs | ||
|
|
||
| BCP=${PN}-20130129.bash_completion | ||
| DESCRIPTION="Language and environment for statistical computing and graphics" | ||
| HOMEPAGE="http://www.r-project.org/" | ||
| SRC_URI=" | ||
| mirror://cran/src/base/R-3/${P}.tar.gz | ||
| https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" | ||
|
|
||
| LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" | ||
| SLOT="0" | ||
| KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" | ||
| IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" | ||
| REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" | ||
|
|
||
| CDEPEND=" | ||
| app-arch/bzip2:0= | ||
| app-arch/xz-utils:0= | ||
| app-text/ghostscript-gpl | ||
| >=dev-libs/libpcre-8.35:3= | ||
| virtual/blas:0 | ||
| || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) | ||
| cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) | ||
| icu? ( dev-libs/icu:= ) | ||
| jpeg? ( virtual/jpeg:0 ) | ||
| lapack? ( virtual/lapack:0 ) | ||
| perl? ( dev-lang/perl ) | ||
| png? ( media-libs/libpng:0= ) | ||
| readline? ( sys-libs/readline:0= ) | ||
| tiff? ( media-libs/tiff:0= ) | ||
| tk? ( dev-lang/tk:0= ) | ||
| X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" | ||
|
|
||
| DEPEND="${CDEPEND} | ||
| virtual/pkgconfig | ||
| doc? ( | ||
| virtual/latex-base | ||
| dev-texlive/texlive-fontsrecommended | ||
| )" | ||
|
|
||
| RDEPEND="${CDEPEND} | ||
| >=sys-libs/zlib-1.2.5.1-r2:0[minizip] | ||
| java? ( >=virtual/jre-1.5 )" | ||
|
|
||
| RESTRICT="minimal? ( test )" | ||
|
|
||
| pkg_setup() { | ||
| if use openmp; then | ||
| if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then | ||
| ewarn "OpenMP is not available in your current selected gcc" | ||
| die "need openmp capable gcc" | ||
| fi | ||
| FORTRAN_NEED_OPENMP=1 | ||
| fi | ||
| fortran-2_pkg_setup | ||
| filter-ldflags -Wl,-Bdirect -Bdirect | ||
| # avoid using existing R installation | ||
| unset R_HOME | ||
| # Temporary fix for bug #419761 | ||
| if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then | ||
| append-flags -fno-ipa-cp-clone | ||
| fi | ||
| } | ||
|
|
||
| src_prepare() { | ||
| epatch \ | ||
| "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ | ||
| "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ | ||
| "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch | ||
|
|
||
| # fix packages.html for doc (gentoo bug #205103) | ||
| sed -i \ | ||
| -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ | ||
| src/library/tools/R/Rd.R || die | ||
|
|
||
| # fix Rscript path when installed (gentoo bug #221061) | ||
| sed -i \ | ||
| -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \ | ||
| src/unix/Makefile.in || die "sed unix Makefile failed" | ||
|
|
||
| # fix HTML links to manual (gentoo bug #273957) | ||
| sed -i \ | ||
| -e 's:\.\./manual/:manual/:g' \ | ||
| $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" | ||
|
|
||
| use lapack && \ | ||
| export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" | ||
|
|
||
| if use X; then | ||
| export R_BROWSER="$(type -p xdg-open)" | ||
| export R_PDFVIEWER="$(type -p xdg-open)" | ||
| fi | ||
| use perl && \ | ||
| export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" | ||
|
|
||
| # don't search /usr/local | ||
| sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die | ||
| # Fix for Darwin (OS X) | ||
| if use prefix; then | ||
| if [[ ${CHOST} == *-darwin* ]] ; then | ||
| sed -i \ | ||
| -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ | ||
| -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ | ||
| -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ | ||
| -e "/SHLIB_EXT/s/\.so/.dylib/" \ | ||
| configure.ac || die | ||
| # sort of "undo" 2.14.1-rmath-shared.patch | ||
| sed -i \ | ||
| -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ | ||
| src/nmath/standalone/Makefile.in || die | ||
| else | ||
| append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" | ||
| fi | ||
| fi | ||
| AT_M4DIR=m4 eaclocal | ||
| eautoconf | ||
| } | ||
|
|
||
| src_configure() { | ||
| # --with-system-tre \ | ||
| # tre is patched from upstream | ||
| econf \ | ||
| --enable-byte-compiled-packages \ | ||
| --enable-R-shlib \ | ||
| --disable-R-framework \ | ||
| --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ | ||
| --docdir="${EPREFIX}/usr/share/doc/${PF}" \ | ||
| rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ | ||
| $(use_enable java) \ | ||
| $(use_enable nls) \ | ||
| $(use_enable openmp) \ | ||
| $(use_enable profile R-profiling) \ | ||
| $(use_enable profile memory-profiling) \ | ||
| $(use_enable static-libs static) \ | ||
| $(use_enable static-libs R-static-lib) \ | ||
| $(use_with cairo) \ | ||
| $(use_with icu ICU) \ | ||
| $(use_with jpeg jpeglib) \ | ||
| $(use_with lapack) \ | ||
| $(use_with !minimal recommended-packages) \ | ||
| $(use_with png libpng) \ | ||
| $(use_with readline) \ | ||
| $(use_with tiff libtiff) \ | ||
| $(use_with tk tcltk) \ | ||
| $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ | ||
| $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ | ||
| $(use_with X x) | ||
| } | ||
|
|
||
| src_compile() { | ||
| export VARTEXFONTS="${T}/fonts" | ||
| emake AR="$(tc-getAR)" | ||
| emake -C src/nmath/standalone \ | ||
| shared $(use static-libs && echo static) AR="$(tc-getAR)" | ||
| use doc && emake info pdf | ||
| } | ||
|
|
||
| src_install() { | ||
| default | ||
| emake -j1 -C src/nmath/standalone DESTDIR="${D}" install | ||
|
|
||
| if use doc; then | ||
| emake DESTDIR="${D}" install-info install-pdf | ||
| dosym ../manual /usr/share/doc/${PF}/html/manual | ||
| fi | ||
|
|
||
| cat > 99R <<-EOF | ||
| LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib | ||
| R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN} | ||
| EOF | ||
| doenvd 99R | ||
| newbashcomp "${WORKDIR}"/${BCP} ${PN} | ||
| # The buildsystem has a different understanding of install_names than | ||
| # we require. Since it builds modules like shared objects (wrong), many | ||
| # objects (all modules) get an incorrect install_name. Fixing the build | ||
| # system here is not really trivial. | ||
| if [[ ${CHOST} == *-darwin* ]] ; then | ||
| local mod | ||
| pushd "${ED}"/usr/lib/R > /dev/null | ||
| for mod in $(find . -name "*.dylib") ; do | ||
| mod=${mod#./} | ||
| install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ | ||
| "${mod}" | ||
| done | ||
| popd > /dev/null | ||
| fi | ||
| docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds} | ||
| } | ||
|
|
||
| pkg_postinst() { | ||
| if use java; then | ||
| einfo "Re-initializing java paths for ${P}" | ||
| R CMD javareconf | ||
| fi | ||
| } |