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fix tests
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gnefedev committed Nov 9, 2023
1 parent 51acb8e commit 0b54396
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions itests/case-buld_trees_on_data_with_a_hole.sh
Original file line number Diff line number Diff line change
Expand Up @@ -70,8 +70,8 @@ assert "grep 'IGHJ6\*05x' alleles/description.tsv | wc -l" "1"
keyOfNumberOfCones=`head -n 1 trees/trees.tsv | sed 's/numberOfClonesInTree/#/' | cut -d# -f1 | wc -w | awk '{ print $1 + 1 }'`
keyOfCDR3=`head -n 1 trees/trees.tsv | sed 's/nSeqCDR3OfMrca/#/' | cut -d# -f1 | wc -w | awk '{ print $1 + 1 }'`

expectedBiggestTreeSize=4
expectedBiggestTreeCDR3="TGTGCTAGAGTGGGCAATGGCTGGGCCCTTGACTTCTGG"
expectedBiggestTreeSize=7
expectedBiggestTreeCDR3="TGTGCTGGAGGGCCTAGTATTGGGAGATACGACTACTGG"
# biggest tree
# `tail +2` - skip first line with column names
# `sort -n -r -k $i` - reverse numeric sort by i column (numberOfClonesInTree in this case)
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