Basic commands.

aglucaci · Jul 19, 2023 · d605b14 · d605b14
1 parent fa8835e
commit d605b14
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Showing 4 changed files with 115 additions and 312 deletions.
diff --git a/src/main/java/com/milaboratory/mixcr/cli/CommandGroupCells.java b/src/main/java/com/milaboratory/mixcr/cli/CommandGroupCells.java
diff --git a/src/main/kotlin/com/milaboratory/mixcr/cli/CommandExportPreset.kt b/src/main/kotlin/com/milaboratory/mixcr/cli/CommandExportPreset.kt
@@ -186,6 +186,7 @@ class CommandExportPreset : MiXCRCommandWithOutputs(), MiXCRPresetAwareCommand<U
                     extend = paramsWithOverride(MiXCRCommandDescriptor.extend),
                     assemble = paramsWithOverride(MiXCRCommandDescriptor.assemble),
                     assembleContigs = paramsWithOverride(MiXCRCommandDescriptor.assembleContigs),
+                    groupClones = paramsWithOverride(MiXCRCommandDescriptor.groupClones),
                     exportAlignments = paramsWithOverride(MiXCRCommandDescriptor.exportAlignments),
                     exportClones = paramsWithOverride(MiXCRCommandDescriptor.exportClones),
                     qc = paramsWithOverride(MiXCRCommandDescriptor.qc)